Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01760 ATGGAAAACTCAAAATTTCCACATCAAACTCACACCACCACCAACAACAAAATTTCCTTAATCCCTCATGAAATAGATAAATCCAACACTAACAAAATTCCAAAAACCTCAAACAAAAGTCATCACAAAAAGTACCTAGGAGTAAGACAAAGACCCTCAGGAAGATGGATAGCTGAGATAAAAGACTCATCACAGAAACTAAGACTATGGTTAGGAACTTTTGACACACCAGAAGATGCTGCCATGTCTTATGACTCAGCTGCAAGGCTTCTTAGAGGAAGAAATGCCAAGACTAATTTTCCAAATACTCGGGAACAAGATTTCGCCATTTTGGGAAAGAATCCTAGAGCTCTTCAACTTCTTAAGCATGCAATGATGAAAAACCATGCAGTTTCTTCATCTACTTCTGTTTATTCTACTGTCATGATGCCGTGGAAGAATGACGCGGTTGTCGAGGAAACTATAGTTTGTTCTATTGCTGATGATGAAGGTTCTAGTGGATTTTCATTTGGAAGTTCTAAGGTTTATTCTTCTGTTGTTGTTGCTCCTTCTTTTAGTGCTTCTTAA 567 0.3774 MENSKFPHQTHTTTNNKISLIPHEIDKSNTNKIPKTSNKSHHKKYLGVRQRPSGRWIAEIKDSSQKLRLWLGTFDTPEDAAMSYDSAARLLRGRNAKTNFPNTREQDFAILGKNPRALQLLKHAMMKNHAVSSSTSVYSTVMMPWKNDAVVEETIVCSIADDEGSSGFSFGSSKVYSSVVVAPSFSAS 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01760 188 MobiDBLite consensus disorder prediction 1 21 - -
Vivi1g01760 188 CDD AP2 43 103 IPR001471 GO:0003700|GO:0006355
Vivi1g01760 188 SUPERFAMILY DNA-binding domain 44 102 IPR016177 GO:0003677
Vivi1g01760 188 SMART rav1_2 44 107 IPR001471 GO:0003700|GO:0006355
Vivi1g01760 188 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 39 142 - -
Vivi1g01760 188 Gene3D AP2/ERF domain 43 102 IPR036955 GO:0003700|GO:0006355
Vivi1g01760 188 ProSiteProfiles AP2/ERF domain profile. 44 101 IPR001471 GO:0003700|GO:0006355
Vivi1g01760 188 FunFam ethylene-responsive transcription factor RAP2-11 43 102 - -
Vivi1g01760 188 Pfam AP2 domain 44 93 IPR001471 GO:0003700|GO:0006355
Vivi1g01760 188 PRINTS Ethylene responsive element binding protein signature 67 83 IPR001471 GO:0003700|GO:0006355
Vivi1g01760 188 PRINTS Ethylene responsive element binding protein signature 45 56 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01760 Vivi-Chr1 37932800 37933965 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01760 35 102 AP2-EREBP Transcription Factor Family AT5G19790 61.765 5.34e-26 98.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi1g01760 AP2 5.2e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01760 - K09286 gmx:100807374 207.223
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g01760 1 37932800 37933965 Vivi1g01760 1 37932800 37933965 ECH