Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01749 ATGGAACCCATGGATATCGTTGGCAAATCAAAGGAAGACGCTTCGCTCCCTAAAGCGACAATGACAAAGATAATTAAAGAGATGTTACCTCCGGATGTACGTGTTGCAAGAGATGCCCAAGACTTATTGATTGAGTGCTGTGTAGAGTTTATAAATCTCATCTCATCAGAGTCCAATGAAGTCTGTAGTAGAGAGGACAAACGGACTATTGCACCTGAGCACGTATTGAAGGCTCTACAGGTGCTTGGATTTGCCGACTACATTGAAGAAGTTTATGCAGCATACGAACAACACAAATTGGAGACCATGCAGGATTCCTTAAAAGGCGGTAAATGGAGCAATGGAGCTGAGATGACTGAGGAAGAAGCATTAGCAGAACAACAAAGGATGTTTGCAGAGGCACGTGCTAGGATGAATGGTGAGGCCATTGCTTCTAAGCAGCAGCCAGATGGCGACCAAAGTTTAAATAGCTAA 474 0.4388 MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLISSESNEVCSREDKRTIAPEHVLKALQVLGFADYIEEVYAAYEQHKLETMQDSLKGGKWSNGAEMTEEEALAEQQRMFAEARARMNGEAIASKQQPDGDQSLNS 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01749 157 MobiDBLite consensus disorder prediction 137 157 - -
Vivi1g01749 157 Gene3D Histone, subunit A 4 148 IPR009072 GO:0046982
Vivi1g01749 157 PANTHER PROTEIN DR1 HOMOLOG 1 156 IPR044255 -
Vivi1g01749 157 SUPERFAMILY Histone-fold 12 143 IPR009072 GO:0046982
Vivi1g01749 157 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 14 79 IPR003958 -
Vivi1g01749 157 FunFam Negative cofactor 2 beta 6 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01749 Vivi-Chr1 37721060 37724234 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01749 1 153 CCAAT-DR1 Transcription Factor Family AT5G23090 81.818 1.83e-92 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vivi1g01749 CBFD_NFYB_HMF 5.9e-22 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01749 K21751 - gmx:100807912 286.574
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g01749 1 37721060 37724234 Vivi1g01749 1 37721060 37724234 ECH