Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01748 ATGGAACCCATGGATATCGTTGGCAAATCAAAGGAAGACGCTTCGCTCCCTAAAGCGACAATGACAAAGATAATTAAAGAGATGTTACCTCCGGATGTACGTGTTGCAAGAGATGCCCAAGACTTATTGATTGAGTGCTGTGTAGAGTTTATAAATCTCATCTCATCAGAGTCCAATGAAGTCTGTAGTAGAGAGGACAAACGGACTATTGCACCTGAGCACGTATTGAAGGCTCTACAGGTGCTTGGATTTGCCGACTACATTGAAGAAGTTTATGCAGCATACGAACAACACAAATTGGAGACCATGGATTCCTTAAAAGGCGGTAAATGGAGCAATGGAGCTGAGATGACTGAGGAAGAAGCATTAGCAGAACAACAAAGGATGTTTGCAGAGGCACGTGCTAGGATGAATGGTGAGGCCATTGCTTCTAAGCAGCAGCCAGATGGCGACCAAAGTTTAAATAGCTAA 471 0.4374 MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLISSESNEVCSREDKRTIAPEHVLKALQVLGFADYIEEVYAAYEQHKLETMDSLKGGKWSNGAEMTEEEALAEQQRMFAEARARMNGEAIASKQQPDGDQSLNS 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01748 156 PANTHER PROTEIN DR1 HOMOLOG 1 155 IPR044255 -
Vivi1g01748 156 SUPERFAMILY Histone-fold 12 142 IPR009072 GO:0046982
Vivi1g01748 156 Gene3D Histone, subunit A 4 147 IPR009072 GO:0046982
Vivi1g01748 156 FunFam Negative cofactor 2 beta 6 142 - -
Vivi1g01748 156 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 14 79 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01748 Vivi-Chr1 37721060 37724250 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01748 1 152 CCAAT-DR1 Transcription Factor Family AT5G23090 81.169 6.57e-90 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vivi1g01748 CBFD_NFYB_HMF 5.8e-22 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01748 K21751 - gmx:100807912 280.026