Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01745 ATGGCCACCATTGATGAAACCGTTAACCAGGACATACATAAGAAGAAAAAGCGCGACAAAAAGAGACGCCGTGATATCGTTGAAGAGCAAAACGGAGCAGAAGAAGAGGATCCGAACGATACTCGTAATAATGGAGAATCCTCGAAAAAGAAGAAGAAGAAAGAGGAGGTGGACGTAGAAAATGAAGTAGTGGTAGAGAAAAAGGTTAAGGATAACAGCGGTTCTGGAATTATGAGCACCGAGTCATTTGCTTCTCTGGGATTATCTGTTCCTACTTCTAAAGCCATTACGGATATGGGATTTCAACGCATGACTCAGATTCAAGCAGGATCGATTCCGCCACTTTTGAGTGGTAAAGATGTTCTTGGTGCTGCAAGGACTGGTTCTGGTAAAACTCTTGCTTTTTTAATTCCTGCTGTGGAGCTTTTGTATAAGCTTAAGTTTAATCCTCGAAGTGGAGCTGGTGTTGTTGTCATATGTCCCACTAGAGAGCTTGCTATTCAGACCCATGATGTTGCCCAGAAGCTTCTAAAGTATCATTCACAAACTCTTGGATTGATTATTGGAGGTTCAGCTAGAAGAACTGAAGCTGAACACCTTGCTAAAGGGATAAATATATTGGTAGCTACTCCTGGTCGTCTTCTAGATCATCTACAAAATACCAAGCGGTTCATATACTCTAACCTGAAGTGCCTCATTATTGATGAAGCTGACAGGCTATTGGAAGCAAACTTTGAGGATGAATTGAAGCAGATTATCAAGCTCCTCCCAAAGAGTAGGCAGACAGCTTTATTTTCAGCTACACAAACAGAGAAGGTTGAAGATCTTGCTCGCCTGTCATTTCAAACTACTCCTGTCTATATTGATGTAGATGATGGAAGAAAGAAGGTTACAAATGAAGGATTGCTACAGGGTTATGTTGTTGTTCCCTGCGCCGAGAGATTTACTGTTCTCTATTCCTTCTTGAAGAGGCACCAATCAAAAAAAGTGATGGTCTTTTTCTCTTCATGCAACAGTGTCAAATTCCATGCAGACATTTTCAATCACATTAATCTGCATTGTGCAAATATTCATGGAAAACAAAAGCAGCAGACCCGGACGGCTGCTTTCAGAGACTTCTGCGAAGCAGAAAATGGGGTCTTGCTCTGTACTGATGTTGCTGCTCGTGGTTTAGACATACCTTCCGTGGACTGGATTGTTCAGTATGACCCACCTGATGAACCAAAGGAATATATCCACAGGGTTGGTAGAACAGCTCGCGGGGAAGGTGGAAAAGGCAATGCATTGCTTTTCCTGATTCCTGAAGAATTGCAGTTTCTTCGTTATCTAAAGAAAGCTAAGGTCCCGGTGAAAGAATATGCTTATGATGAAAAGAAGGTGGCTAATATACACTCTCACCTGGAGAAATTGGTTGCCGAAAATTATTTTTTGAACAAAATGGCTAAGGAAGCATATAGATCATACATATTAGCATACGATTCACATTCCTCCAAGGATATATTCAATGTTCAACGCCTCGATCTGCAGGCTGTTGCAGCTTCATTCTGTTTTTCAAACCCTCCCAATGTGAGTGTAAACATAAGCAGCAGTAAGCAAAGGAAGAAAACGCGTAGAGTTGATGGAGGCAGACATGGATTCAACCCGAACAATCCTTATGGAAAGCGAAATACTGATGATAAGCGGCAGTTTGTGAGGCATTAA 1701 0.4162 MATIDETVNQDIHKKKKRDKKRRRDIVEEQNGAEEEDPNDTRNNGESSKKKKKKEEVDVENEVVVEKKVKDNSGSGIMSTESFASLGLSVPTSKAITDMGFQRMTQIQAGSIPPLLSGKDVLGAARTGSGKTLAFLIPAVELLYKLKFNPRSGAGVVVICPTRELAIQTHDVAQKLLKYHSQTLGLIIGGSARRTEAEHLAKGINILVATPGRLLDHLQNTKRFIYSNLKCLIIDEADRLLEANFEDELKQIIKLLPKSRQTALFSATQTEKVEDLARLSFQTTPVYIDVDDGRKKVTNEGLLQGYVVVPCAERFTVLYSFLKRHQSKKVMVFFSSCNSVKFHADIFNHINLHCANIHGKQKQQTRTAAFRDFCEAENGVLLCTDVAARGLDIPSVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELQFLRYLKKAKVPVKEYAYDEKKVANIHSHLEKLVAENYFLNKMAKEAYRSYILAYDSHSSKDIFNVQRLDLQAVAASFCFSNPPNVSVNISSSKQRKKTRRVDGGRHGFNPNNPYGKRNTDDKRQFVRH 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01745 566 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 444 IPR027417 -
Vivi1g01745 566 CDD DEADc_DDX18 92 289 IPR044773 GO:0003724|GO:0005524
Vivi1g01745 566 PANTHER RNA HELICASE 32 482 - -
Vivi1g01745 566 SMART ultradead3 100 305 IPR014001 -
Vivi1g01745 566 SMART helicmild6 341 422 IPR001650 -
Vivi1g01745 566 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 112 287 IPR014001 -
Vivi1g01745 566 FunFam RNA helicase 298 528 - -
Vivi1g01745 566 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 81 109 IPR014014 GO:0003724
Vivi1g01745 566 Pfam Domain of unknown function (DUF4217) 463 523 IPR025313 -
Vivi1g01745 566 CDD SF2_C_DEAD 302 432 - -
Vivi1g01745 566 Gene3D - 12 291 IPR027417 -
Vivi1g01745 566 Gene3D - 300 539 IPR027417 -
Vivi1g01745 566 Pfam DEAD/DEAH box helicase 105 276 IPR011545 GO:0003676|GO:0005524
Vivi1g01745 566 MobiDBLite consensus disorder prediction 22 60 - -
Vivi1g01745 566 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 233 241 IPR000629 -
Vivi1g01745 566 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 314 471 IPR001650 -
Vivi1g01745 566 MobiDBLite consensus disorder prediction 525 566 - -
Vivi1g01745 566 MobiDBLite consensus disorder prediction 1 60 - -
Vivi1g01745 566 Pfam Helicase conserved C-terminal domain 315 421 IPR001650 -
Vivi1g01745 566 SMART DUF4217_3 462 525 IPR025313 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01745 Vivi-Chr1 37664556 37672222 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01745 81 440 Eukaryotic Initiation Factors Gene Family AT3G13920 32.692 1.23e-49 175