Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01721 ATGATATTTTCACCTCTTTGGATGTTCCATGGCGTTGTGGCTCGAGGAAGGTTTTCATTACCTGCACCCTCAGCTCCGCGTAATCGACATTGGGCACCGTGTCATGCCGTTGTCGCAACGCCATTGCTTATTGCGTTTGAGTTGCTCCTTTGTATATATCTTGAGAGCTTATACGTTCGTGGCTTTGCAGCAGTCGACCTGAAGATTGTGTTCCTTCCTTTACTAACATTTGAAATCATAATTCTCATTGACAATTTCAGAATGTGTAGAGCTCTAATGCCAGGGGATGAAGAAAGCATGAGTGATGAAGCAATATGGGAAACTCTTCCTCACTTTTGGGTTGCCATCTCTATGGTTTTCTTCGTTACTGCTACAGTCTTCACACTCCTAAAACTGAATGGTAGTGTAGCTTCTCTCGGTTGGTGGGACTTGTTTATTAACTTCAGTATTGCCGAGTGCTTTGCGTTTCTTGTATGTACTAAGTGGTCGAATCCTGTCATTCATAGAAGTTCCAGAGAACCGAGTTCTTCTACTACAGTTAGATATCTTGACTGGAACAGTGGTTTAATGGTTTCTTCAGAAGGAGATCAACGGGAGGCGAGAATATGTAGCCTGCAAGACATAGGGGGTCATTTCATGAAAGTGCCGATTATTGTATTTCAGGTTCTTCTTTGCATGCATTTAGAGGGAACGACTGCTTTTGCTGCACATTTATCTCTTGCAGTTCTTTTTTCTCCCATTTTCATATTGCAAGGTGTTGGCGTGCTGTTATCGGCATCTAAATTTGTGGAGAAACTTGTGCTTCTTCTACGTAGCGGAGCGGGTAGAGGACTTTATTTTAGATTCTCTTCAAGAGCTCACGATTGCTTGGGGTTCTTACACCATGGTTCTAGATTATTAGGCTGGTGGTCAATTGATGAAGGAAGTCGGGAAGAACAGGCCCGATTGTACCACGAGGGAGCATCTGGGTATAATACATTCAATGGTTACCCTCCTGAGATTGTTAAGAAAATGCCTAAGAGGGATCTCGCCGAAGAGGTGTGGAGACTCCAGGCTGCTCTTGGCGAGCAGACGGAAATTACAAAATACAGCCAACAGGAATATGAAAGACTTAAAAATGAGAAAGTGCTGTGCCGAATTTGTTTCGAAGGAGAGATTACTGTTGTATTGCTCCCATGTAGGCACCGTGTCCTTTGCAACTCATGCTCAGAGAAGTGTAAGACGTGCCCGATGTGCCGCAACTATATCGCAGAGCGCTTGCCAGTATATGATGTCTAG 1278 0.4397 MIFSPLWMFHGVVARGRFSLPAPSAPRNRHWAPCHAVVATPLLIAFELLLCIYLESLYVRGFAAVDLKIVFLPLLTFEIIILIDNFRMCRALMPGDEESMSDEAIWETLPHFWVAISMVFFVTATVFTLLKLNGSVASLGWWDLFINFSIAECFAFLVCTKWSNPVIHRSSREPSSSTTVRYLDWNSGLMVSSEGDQREARICSLQDIGGHFMKVPIIVFQVLLCMHLEGTTAFAAHLSLAVLFSPIFILQGVGVLLSASKFVEKLVLLLRSGAGRGLYFRFSSRAHDCLGFLHHGSRLLGWWSIDEGSREEQARLYHEGASGYNTFNGYPPEIVKKMPKRDLAEEVWRLQAALGEQTEITKYSQQEYERLKNEKVLCRICFEGEITVVLLPCRHRVLCNSCSEKCKTCPMCRNYIAERLPVYDV 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01721 425 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 1 425 - -
Vivi1g01721 425 Pfam Zinc finger, C3HC4 type (RING finger) 375 417 - -
Vivi1g01721 425 FunFam Kinesin-like protein KIN-7D, mitochondrial 355 423 - -
Vivi1g01721 425 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 353 423 IPR013083 -
Vivi1g01721 425 SUPERFAMILY RING/U-box 370 420 - -
Vivi1g01721 425 ProSiteProfiles Zinc finger RING-type profile. 378 413 IPR001841 -
Vivi1g01721 425 SMART ring_2 378 412 IPR001841 -
Vivi1g01721 425 Pfam Transmembrane Fragile-X-F protein 1 250 IPR019396 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01721 Vivi-Chr1 37171853 37177512 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01721 5 425 C3H Transcription Factor Family AT1G73950 73.872 0.0 635
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01721 - - tpra:123921257 801.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g01721 1 37171853 37177512 Vivi1g01721 1 37171853 37177512 ECH