Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01720 ATGAGCTGGAGTAGGGTGTTGAAATCGGCGCAGGCTCTCGCCGCTCACACTTTTCTCATCTGTTTTACTCTTTTGCTGTTTCTCAAGCTTGATCATCTCATCTCTTCCTCTTGGTGGATGATATTTTCACCTCTTTGGATGTTCCATGGCGTTGTGGCTCGAGGAAGGTTTTCATTACCTGCACCCTCAGCTCCGCGTAATCGACATTGGGCACCGTGTCATGCCGTTGTCGCAACGCCATTGCTTATTGCGTTTGAGTTGCTCCTTTGTATATATCTTGAGAGCTTATACGTTCGTGGCTTTGCAGCAGTCGACCTGAAGATTGTGTTCCTTCCTTTACTAACATTTGAAATCATAATTCTCATTGACAATTTCAGAATGTGTAGAGCTCTAATGCCAGGGGATGAAGAAAGCATGAGTGATGAAGCAATATGGGAAACTCTTCCTCACTTTTGGGTTGCCATCTCTATGGTTTTCTTCGTTACTGCTACAGTCTTCACACTCCTAAAACTGAATGGTAGTGTAGCTTCTCTCGGTTGGTGGGACTTGTTTATTAACTTCAGTATTGCCGAGTGCTTTGCGTTTCTTGTATGTACTAAGTGGTCGAATCCTGTCATTCATAGAAGTTCCAGAGAACCGAGTTCTTCTACTACAGTTAGATATCTTGACTGGAACAGTGGTTTAATGGTTTCTTCAGAAGGAGATCAACGGGAGGCGAGAATATGTAGCCTGCAAGACATAGGGGGTCATTTCATGAAAGTGCCGATTATTGTATTTCAGGTTCTTCTTTGCATGCATTTAGAGGGAACGACTGCTTTTGCTGCACATTTATCTCTTGCAGTTCTTTTTTCTCCCATTTTCATATTGCAAGGTGTTGGCGTGCTGTTATCGGCATCTAAATTTGTGGAGAAACTTGTGCTTCTTCTACGTAGCGGAGCGGGTAGAGGACTTTATTTTAGATTCTCTTCAAGAGCTCACGATTGCTTGGGGTTCTTACACCATGGTTCTAGATTATTAGGCTGGTGGTCAATTGATGAAGGAAGTCGGGAAGAACAGGCCCGATTGTACCACGAGGGAGCATCTGGGTATAATACATTCAATGGTTACCCTCCTGAGATTGTTAAGAAAATGCCTAAGAGGGATCTCGCCGAAGAGGTGTGGAGACTCCAGGCTGCTCTTGGCGAGCAGACGGAAATTACAAAATACAGCCAACAGGAATATGAAAGACTTAAAAATGAGAAAGTGCTGTGCCGAATTTGTTTCGAAGGAGAGATTACTGTTGTATTGCTCCCATGTAGGCACCGTGTCCTTTGCAACTCATGCTCAGAGAAGTGTAAGACGTGCCCGATGTGCCGCAACTATATCGCAGAGCGCTTGCCAGTATATGATGTCTAG 1395 0.443 MSWSRVLKSAQALAAHTFLICFTLLLFLKLDHLISSSWWMIFSPLWMFHGVVARGRFSLPAPSAPRNRHWAPCHAVVATPLLIAFELLLCIYLESLYVRGFAAVDLKIVFLPLLTFEIIILIDNFRMCRALMPGDEESMSDEAIWETLPHFWVAISMVFFVTATVFTLLKLNGSVASLGWWDLFINFSIAECFAFLVCTKWSNPVIHRSSREPSSSTTVRYLDWNSGLMVSSEGDQREARICSLQDIGGHFMKVPIIVFQVLLCMHLEGTTAFAAHLSLAVLFSPIFILQGVGVLLSASKFVEKLVLLLRSGAGRGLYFRFSSRAHDCLGFLHHGSRLLGWWSIDEGSREEQARLYHEGASGYNTFNGYPPEIVKKMPKRDLAEEVWRLQAALGEQTEITKYSQQEYERLKNEKVLCRICFEGEITVVLLPCRHRVLCNSCSEKCKTCPMCRNYIAERLPVYDV 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01720 464 ProSiteProfiles Zinc finger RING-type profile. 417 452 IPR001841 -
Vivi1g01720 464 Pfam Zinc finger, C3HC4 type (RING finger) 414 456 - -
Vivi1g01720 464 FunFam Kinesin-like protein KIN-7D, mitochondrial 394 462 - -
Vivi1g01720 464 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 1 464 - -
Vivi1g01720 464 SUPERFAMILY RING/U-box 409 459 - -
Vivi1g01720 464 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 392 462 IPR013083 -
Vivi1g01720 464 SMART ring_2 417 451 IPR001841 -
Vivi1g01720 464 Pfam Transmembrane Fragile-X-F protein 28 289 IPR019396 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01720 Vivi-Chr1 37171853 37177590 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01720 1 464 C3H Transcription Factor Family AT1G73950 72.414 0.0 681