Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01719 ATGTCATCAAGTGCAACAATTTGGAGCTATGAAGAAGAAAAAGCATTTGAGAATGCCATAGCCATGCATTGGATTGAAAAACAAGATTCTAAAGAACAAGAATGGGAAAAGATTGCTTCATGTGTCCCTAACAAAAGCATGGAGGAAGTGAAACAACATTATCAAGTGTTGGTAGATGATGTTAGTGCAATTGAGGCAGGTCATGTTTCATTTCCAAATTATGCTAATGAATTATTAGAAAGTAGTTCAAATAAAGATTCTTCTAAGTCCACCACAAGTTTGGATAAGAGATCAAGTTGTAATTTTGGTAGTGGGTTTTCTGGTTTGGGACATGACTCCTCCACCCACCATAGTAGTGGGAAAGGTGGACTGTCAAGGTCTTCATCTTCATCAGAACAAGAAAGGAGAAAAGGAATTCCATGGACAGAAGAAGAGCATAGGCTATTTTTACTAGGTCTAGACAAATTTGGAAAAGGAGACTGGAGGAGTATTTCAAGGAACTTTGTGATATCAAGGACACCAACACAAGTGGCAAGTCATGCACAAAAGTATTTCATAAGGTTGAACTCAATGAATAGAGATAGAAGAAGGTCGAGTATTCATGATATTACTAGTGTTAACAATGGAGATGTAGCTAGTAATCATCAAGCACCAATAACTGGCCAACATGGTAACACAATTCCTTCAAATACAATGGGTTTAGGACAATCAATGAAGCATAGAGTTCATCCTCATCATCCTGGTGGTGGTTTAGGAATGTATGGAGCACCAGTTGGACATCCTGTTGTTGCTCCTCCTGCTCATATGGCTTCTGCAGTTGGGACTCCGGTTATGCTTCCTCATCATCCTCATCATCATCCACCTTATGTTGTTCCTCTAGCTTACCCTATGGCACCTCCACCAATGCACCAATAA 915 0.3956 MSSSATIWSYEEEKAFENAIAMHWIEKQDSKEQEWEKIASCVPNKSMEEVKQHYQVLVDDVSAIEAGHVSFPNYANELLESSSNKDSSKSTTSLDKRSSCNFGSGFSGLGHDSSTHHSSGKGGLSRSSSSSEQERRKGIPWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKYFIRLNSMNRDRRRSSIHDITSVNNGDVASNHQAPITGQHGNTIPSNTMGLGQSMKHRVHPHHPGGGLGMYGAPVGHPVVAPPAHMASAVGTPVMLPHHPHHHPPYVVPLAYPMAPPPMHQ 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01719 304 Gene3D - 139 191 - -
Vivi1g01719 304 NCBIfam myb-like DNA-binding domain, SHAQKYF class 137 187 IPR006447 GO:0003677
Vivi1g01719 304 ProSiteProfiles Myb-like domain profile. 133 185 IPR001005 -
Vivi1g01719 304 CDD SANT 8 58 IPR001005 -
Vivi1g01719 304 FunFam transcription factor MYB1R1 139 190 - -
Vivi1g01719 304 SMART sant 137 187 IPR001005 -
Vivi1g01719 304 SMART sant 4 60 IPR001005 -
Vivi1g01719 304 FunFam Transcription factor SRM1 1 71 - -
Vivi1g01719 304 SUPERFAMILY Homeodomain-like 135 190 IPR009057 -
Vivi1g01719 304 PANTHER TRANSCRIPTION FACTOR KUA1 4 295 - -
Vivi1g01719 304 Pfam Myb-like DNA-binding domain 140 185 IPR001005 -
Vivi1g01719 304 Pfam Myb-like DNA-binding domain 8 57 IPR001005 -
Vivi1g01719 304 ProSiteProfiles Myb-like domain profile. 8 58 IPR001005 -
Vivi1g01719 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 133 189 IPR017930 -
Vivi1g01719 304 ProSiteProfiles SANT domain profile. 141 189 IPR017884 -
Vivi1g01719 304 CDD SANT 140 185 IPR001005 -
Vivi1g01719 304 SUPERFAMILY Homeodomain-like 7 62 IPR009057 -
Vivi1g01719 304 MobiDBLite consensus disorder prediction 111 129 - -
Vivi1g01719 304 Gene3D - 1 71 - -
Vivi1g01719 304 MobiDBLite consensus disorder prediction 111 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01719 Vivi-Chr1 37154376 37155970 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi1g01719 Myb_DNA-binding 5.9e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01719 - - gmx:778049 434.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g01719 1 37154376 37155970 Vivi1g01719 1 37154376 37155970 ECH