Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01703 ATGTCTCAGTCCAAATGTGATGAAGTTGATAAAATGTTAGATGCTTATATCTACGATTATCTCGTGAAGCAACAATTGTATGAAACTGCGAGAAATTTTCACGATGAAGCCAAGGTTGTACCTGATGTTGTTAGGTATGCACCTGATGATTTTCTCTTTGAGTGGTGGTCTGTTTTCTGGGAGTTATTTATGGCTAAGAGAGGTCTGTCACACTCAGAACCAGCAGTGTCTTACCTTAAGGCTCAGGGAATGCGGAAGCAAGAAGAGAAAAGGAGAATCCTGTTTGTGTCACGGAGACCTGCTCAGCAGCCGAAATATGGGGCTGAAACTCAAGTTGTTAATGACAATGTTCTCTGTTCCATAAACAATGGTCGTTTGGTGAGGCATAACTGGGTAACTTCTAATGCAACAAAACGAAATAGGGACATGCTGAAGCCTCCCCTCCATGGAAATGCTTTAGATGAAATGAGAATTAAGAAAATGAAAACTAATAACACTGGTCAGCTTCCGATCGAGCATTGTGCCTTGTTTAACGCTGTAGCTGCAATGTCTGCCAGACAGACTTCAAGACAAACATTCCGCAGTGCATTTAGCATTTTAAAAGAGAATCTTCAACAAGACGAAAATCAGAACCAGCAACTTCCAGGGTCTATACAAGGCATGACCAGTAATAAGAATCCAATGATGGGGTTCCGCACATTTATCCATATTAATCATGGTGGGAGCAATTTAACTCGGAAAAGGCGGCCTTTAGCAGAGCTGGATCAGCTTCACTCAGAACTTCACCAGGAGGATAATTTGATGCTGTCTTCACAATCTTCCAATCAATTTTCACCACAGCAGCAACTTATGCTTCAGGCACAACAGGATTTAGTTAATCCGTTTCTCTGTGGTTTTGTTGGCAAAAGACCAAGGGTGCTTCTAAATAATCAAAATATTGTTCCAGGGAAAGATGGCCAATCAAATTATTTTGGTGATTCAATTCCCAATATTGTAACACCTGCACCAATTGGTTTCTCTGAATTGCCTTATCTTGTCAATATCTCTGGAACTGCAAACACAACAAGACAATCTTTTGGTTCACCTTCTCCACCATCAATGCAGACACCACTGCCAACTTGGCAACAGAATGATTTGACCTCACCTGCGTCAACACAGACTCAATGGGATAATATGGATCATCACAAGAGTGATGTATCTGTGGGTGACAATTTTGAGGCATTATCATGCTTCGCTGATGCAGACCAAAAAGGAGAAGTTGACAACGGATTCTCATTTAAGGAGATCAAGCATGGAATGGCTAGTTCACATAAAGTTAGTTGCTGCCACTTCTCCTTGGATGGAAAACTACTTGTTACGGGTGGTCATGATAACAAGGCTTCTCTTTGGTGCACAGAATCGTTTAACCTGAAATCTACTCTTCACGGGCACTCGAAATGGATAACTGATGTTAGATTTTCCCCAAGCATGTTGTGTGTTGCTACGTCCTCAGCTGACAAAACTGTAAAGGTTTGGGGTGTTAATAATCCTAGTCATTCTATTCGGACATTTACAGGGCATACAAGAACTGTGATGTCACTAGACTTTCACCCAAAAAATGATGACCTTATTTGCTCTTGTGATAAAATGGAGATAAGATATTGGAGTATTGAAAATGGTAGTTGTGTTGGGGTTCTCAAGGGTGGTGCAACTCAGGTGAGATTTCAACCTGGTTTGGGAAAGCTTCTTGCAGCAGCAGTAAATAATCTAATACTCATTCTTGATGCAGAAACTCTGAGTTGCAGAATTAAATTGCTGGGCCACAATAGCATTGTTCATTCGGTGTGCTGGCACTCGTCTGGAAAATATCTGGCCTCTGTCAGTGATGATCTCGTGAGAATCTGGGACATTGGTGCCAATGTCAGTGGGGTGTATATTCACGAACTGGATACAGCTGGGTCTGATGACAAAATCAAGAGCTGTGTTTTTCATCCCATTTATCATGTTCTGATCCTTGGCCGCGACGAGACTCTTATGCTGTGGGATTATATAAAGAGAAATGTAATGTTTCTGCGTGGACACGACGAGCTTGTATCTGCCTTGGCAGTATCCAAAGTTACTGGATTGGTGGCTTCAGTTAGTCATGACAAACATTTCAAAATCTGGATGTGA 2151 0.4161 MSQSKCDEVDKMLDAYIYDYLVKQQLYETARNFHDEAKVVPDVVRYAPDDFLFEWWSVFWELFMAKRGLSHSEPAVSYLKAQGMRKQEEKRRILFVSRRPAQQPKYGAETQVVNDNVLCSINNGRLVRHNWVTSNATKRNRDMLKPPLHGNALDEMRIKKMKTNNTGQLPIEHCALFNAVAAMSARQTSRQTFRSAFSILKENLQQDENQNQQLPGSIQGMTSNKNPMMGFRTFIHINHGGSNLTRKRRPLAELDQLHSELHQEDNLMLSSQSSNQFSPQQQLMLQAQQDLVNPFLCGFVGKRPRVLLNNQNIVPGKDGQSNYFGDSIPNIVTPAPIGFSELPYLVNISGTANTTRQSFGSPSPPSMQTPLPTWQQNDLTSPASTQTQWDNMDHHKSDVSVGDNFEALSCFADADQKGEVDNGFSFKEIKHGMASSHKVSCCHFSLDGKLLVTGGHDNKASLWCTESFNLKSTLHGHSKWITDVRFSPSMLCVATSSADKTVKVWGVNNPSHSIRTFTGHTRTVMSLDFHPKNDDLICSCDKMEIRYWSIENGSCVGVLKGGATQVRFQPGLGKLLAAAVNNLILILDAETLSCRIKLLGHNSIVHSVCWHSSGKYLASVSDDLVRIWDIGANVSGVYIHELDTAGSDDKIKSCVFHPIYHVLILGRDETLMLWDYIKRNVMFLRGHDELVSALAVSKVTGLVASVSHDKHFKIWM 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01703 716 Gene3D - 566 716 IPR015943 GO:0005515
Vivi1g01703 716 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 517 554 - -
Vivi1g01703 716 ProSiteProfiles Trp-Asp (WD) repeats profile. 517 558 IPR001680 GO:0005515
Vivi1g01703 716 CDD WD40 436 715 - -
Vivi1g01703 716 SMART WD40_4 591 629 IPR001680 GO:0005515
Vivi1g01703 716 SMART WD40_4 677 716 IPR001680 GO:0005515
Vivi1g01703 716 SMART WD40_4 552 588 IPR001680 GO:0005515
Vivi1g01703 716 SMART WD40_4 510 549 IPR001680 GO:0005515
Vivi1g01703 716 SMART WD40_4 467 506 IPR001680 GO:0005515
Vivi1g01703 716 SMART WD40_4 425 464 IPR001680 GO:0005515
Vivi1g01703 716 SMART WD40_4 635 675 IPR001680 GO:0005515
Vivi1g01703 716 SUPERFAMILY WD40 repeat-like 425 715 IPR036322 GO:0005515
Vivi1g01703 716 Pfam LisH 11 37 IPR006594 GO:0005515
Vivi1g01703 716 ProSiteProfiles Trp-Asp (WD) repeats profile. 474 515 IPR001680 GO:0005515
Vivi1g01703 716 ProSiteProfiles Trp-Asp (WD) repeats profile. 684 716 IPR001680 GO:0005515
Vivi1g01703 716 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 8 715 IPR044716 GO:0003714
Vivi1g01703 716 MobiDBLite consensus disorder prediction 354 396 - -
Vivi1g01703 716 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 474 509 - -
Vivi1g01703 716 Pfam WD domain, G-beta repeat 514 548 IPR001680 GO:0005515
Vivi1g01703 716 Pfam WD domain, G-beta repeat 594 629 IPR001680 GO:0005515
Vivi1g01703 716 Pfam WD domain, G-beta repeat 470 505 IPR001680 GO:0005515
Vivi1g01703 716 Pfam WD domain, G-beta repeat 436 463 IPR001680 GO:0005515
Vivi1g01703 716 Pfam WD domain, G-beta repeat 680 715 IPR001680 GO:0005515
Vivi1g01703 716 Gene3D - 383 565 IPR015943 GO:0005515
Vivi1g01703 716 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 684 716 - -
Vivi1g01703 716 MobiDBLite consensus disorder prediction 354 390 - -
Vivi1g01703 716 ProSiteProfiles LIS1 homology (LisH) motif profile. 9 41 IPR006594 GO:0005515
Vivi1g01703 716 ProSiteProfiles Trp-Asp (WD) repeats profile. 598 630 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01703 Vivi-Chr1 36721392 36728437 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01703 428 678 Miscellaneous Gene Families AT5G08390 26.154 8.11e-20 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Vivi1g01703 WD40 0.045 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01703 - - vvo:131634127 1427.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g01703 1 36721392 36728437 Vivi1g01703 1 36721392 36728437 ECH