Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01698 ATGGCATCACCGTCTGAACTAGGCTTGGATTGCAAGCCACATAGCTACTCCATGTTGCTTAAATCAGTTGGTGAACAAAGTGATCAAACCTACAAACTCGAAGAGTTTGTTTCTCGTTTGGAAGAAGAACGTCTCAAAATTGATGCGTTCAAGCGCGAGCTTCCTCTCTGCATGCAACTTCTCACAAACGCGATGGAGGCATCGAAGCAACAACTTCAAGCTTACAAAGTGAGTCAAGGAGTTACGAAGCCGATTCTCGAAGAATTCATACCGGTAAAGGAAGTAACATCATCAGAAACCATGGAAAATATAACTAATAATAATGTATGTGATAAGGCGAACTGGATGACAAGTGCTCAACTATGGAGTCAAACAACTGAAGCAACAAAACAACAAAACTCCACAAAAGAAACTTCTGAAAGAAACAATATTGGATTCAACATTAGTCCTAAACATAGAAACGGTGGAGCCTTTTTACCGTTCTCAAAAGAAAGAAACAACTCATCGTCATGCCAAAATCAAGGTCTTCCTGAACTAGCACTTGCCTCTAACCAGAAAGAGGTTGAGGATAAGAAACATGAAGAAAAAGGAGAGAAGAGAGAAAACACCGAAGAGAAAGGAAGTCCAGTAGCATCATCACATACTCAAACAACAAGCAACAATTCAAACCAAACTCATAGGAAAGCAAGAAGGTGTTGGTCACCTGACTTGCACCGCAGATTCGTTAATGCTCTTCAAATGCTTGGTGGATCTCAAGTGGCAACACCAAAACAGATAAGGGAATTGATGAAGGTGGATGGATTGACCAATGATGAAGTGAAAAGCCATTTGCAGAAATATAGGCTACACACAAGAAGACCTAGCCTAAGTGCACAACCAGGTGCACCACCAGCACAGCTGGTTGTTTTAGGAGGAATATGGGTCCCACCGGAATATGCCACCGCGCATTCCGGAGGAGCAACTACTCTCTACGGTGGACATCCTACTTCTCATCATATGACTCTGCCGCACTACTGCACTGCACCTGGTCAGGAGTATTACACTACTGCACCTCCGCAGCAGCTACTTCCGCCGCCGCATCATATGCACCATGTTTACAAGGCGACGCCGCACGGTCAGGGCTCGCCGGAGACGGGTGGAGATGGGTTGGAGAGTATTGAGAATGGGAAGTCGGAGAGTGGGAGCTGGAAAGAAGGGAGTTCTGAGAATGAAGGAGAGAGGAAAGGGTTTGTTGAAGAGAGCAATGGGAGTGAGATCACTCTGAAATTTTAA 1272 0.4473 MASPSELGLDCKPHSYSMLLKSVGEQSDQTYKLEEFVSRLEEERLKIDAFKRELPLCMQLLTNAMEASKQQLQAYKVSQGVTKPILEEFIPVKEVTSSETMENITNNNVCDKANWMTSAQLWSQTTEATKQQNSTKETSERNNIGFNISPKHRNGGAFLPFSKERNNSSSCQNQGLPELALASNQKEVEDKKHEEKGEKRENTEEKGSPVASSHTQTTSNNSNQTHRKARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSLSAQPGAPPAQLVVLGGIWVPPEYATAHSGGATTLYGGHPTSHHMTLPHYCTAPGQEYYTTAPPQQLLPPPHHMHHVYKATPHGQGSPETGGDGLESIENGKSESGSWKEGSSENEGERKGFVEESNGSEITLKF 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01698 423 MobiDBLite consensus disorder prediction 124 149 - -
Vivi1g01698 423 SUPERFAMILY Homeodomain-like 225 286 IPR009057 -
Vivi1g01698 423 MobiDBLite consensus disorder prediction 124 230 - -
Vivi1g01698 423 Coils Coil 33 53 - -
Vivi1g01698 423 MobiDBLite consensus disorder prediction 208 228 - -
Vivi1g01698 423 MobiDBLite consensus disorder prediction 161 180 - -
Vivi1g01698 423 NCBIfam myb-like DNA-binding domain, SHAQKYF class 228 283 IPR006447 GO:0003677
Vivi1g01698 423 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 225 285 IPR017930 -
Vivi1g01698 423 MobiDBLite consensus disorder prediction 184 207 - -
Vivi1g01698 423 MobiDBLite consensus disorder prediction 397 413 - -
Vivi1g01698 423 Pfam Myb-like DNA-binding domain 230 281 IPR001005 -
Vivi1g01698 423 Gene3D - 227 285 - -
Vivi1g01698 423 MobiDBLite consensus disorder prediction 353 423 - -
Vivi1g01698 423 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 20 397 IPR044787 GO:0003700|GO:0006355
Vivi1g01698 423 FunFam Myb family transcription factor 227 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01698 Vivi-Chr1 36533711 36535686 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01698 1 423 G2-like Transcription Factor Family AT2G03500 49.791 5.13e-117 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vivi1g01698 Myb_DNA-binding 8.9e-06 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g01698 1 36533711 36535686 Vivi1g01698 1 36533711 36535686 ECH