Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01697 ATGACGCTGGACGATGATAGCTCCATATACGTTGGAGGCCTTCCCTACGACGCCAACGAAGATACAATTCGCACTGTCTTCAATTTGTATGGCGCTATCCTTGATGTCAAGATTATCAATGACCAACGTACAGTAGGCAAATGCTATTGTTTTGTTACTTTCACAAGCCCTAGGTCAGCAATTGATGCTATCAACGACATGAATGGAAGAAGTATTAGTGGGCGTGTGGTCAAAGTTAATGGGGTCAAGTCTCGCGGTGGTGGTGGTGGCGGCGGTGGTAGGTCAAATTTTGGGAGAGAAAGAGAACGTTATTATCATCATAATGATGAAAGGAATGGTGATTGGGATCGTGGTCGAGATAGAGAGATTCGAGACCAAGATTATGATCGTGGCAGTGGCAGAGATCATATTCGAGAGCAAAATTATGATCATGGTAATGAGAAAGATGGATACAGGAGTAGAGGCGGTGATTGGAGTCGACATGGTGATAGGTCCCGAGACCGTGATAGGTCTCGGGATCGTGATAGGTCCCGAGACCATGAGAGGGGTAGGGATAGGAGAGTTGAACATGTGCAAGATTATGATGATCAAGGTAGAGAAAGCATGTTAGATGATGATTGGAATCGTGATGATGATAGGGCTGAAAATCAACAAGAAAACAGTAGGGTACATGGTGGAGATGTGGATAGAGAGCATAACTTGGATGTGGATACCGAGAGAAAGATGGATAGGGTTAGTGATCCTGATAAAAATTTTGATGAACCTAAAAGAGAGCCGCCAAGGAGAAACATAGATTTGAATGTGACAAATGAAAATAGTCCATCAGATTCTACTGATGACCACAATGATGAGGCAGAAGATGAGTTAGAGCAGTCAATGCAAGAACTTGATAAACTAAAAAAGGAGGTTTCTAAGCTGGAAGAGAGAGTGGAAGAAAGAAGAGTTAATGTTACGGAGTTGCAAAAACACTCTAAGAAACTAGAGGATGCGGTGATTTCTGCAAAGAAACAATCTCTATATAGCCAGATGCAGTTGACCAAGCTGCATGAGTGTTATCTTCAAGTGCAAGATTCCACAGAGAGACTTAAAACCAGTGAAAAAGAATTCCAGGCTCTAGTTGATTCGGTAATGTTTGAGAGTGATGGTGATGGTCTTGGACAACTTACAAATGGAAGTCTTGATGGTAAATAG 1191 0.424 MTLDDDSSIYVGGLPYDANEDTIRTVFNLYGAILDVKIINDQRTVGKCYCFVTFTSPRSAIDAINDMNGRSISGRVVKVNGVKSRGGGGGGGGRSNFGRERERYYHHNDERNGDWDRGRDREIRDQDYDRGSGRDHIREQNYDHGNEKDGYRSRGGDWSRHGDRSRDRDRSRDRDRSRDHERGRDRRVEHVQDYDDQGRESMLDDDWNRDDDRAENQQENSRVHGGDVDREHNLDVDTERKMDRVSDPDKNFDEPKREPPRRNIDLNVTNENSPSDSTDDHNDEAEDELEQSMQELDKLKKEVSKLEERVEERRVNVTELQKHSKKLEDAVISAKKQSLYSQMQLTKLHECYLQVQDSTERLKTSEKEFQALVDSVMFESDGDGLGQLTNGSLDGK 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01697 396 MobiDBLite consensus disorder prediction 96 264 - -
Vivi1g01697 396 MobiDBLite consensus disorder prediction 80 290 - -
Vivi1g01697 396 CDD RRM_SF 9 80 - -
Vivi1g01697 396 PANTHER GEO13361P1-RELATED 7 177 - -
Vivi1g01697 396 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Vivi1g01697 396 SMART rrm1_1 8 80 IPR000504 GO:0003723
Vivi1g01697 396 Gene3D - 2 99 IPR012677 -
Vivi1g01697 396 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 84 IPR000504 GO:0003723
Vivi1g01697 396 SUPERFAMILY RNA-binding domain, RBD 4 111 IPR035979 GO:0003676
Vivi1g01697 396 Coils Coil 275 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01697 Vivi-Chr1 36517389 36520223 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01697 7 79 Eukaryotic Initiation Factors Gene Family AT1G22760 32.877 6.04e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01697 - - psat:127073620 607.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g01697 1 36517389 36520223 Vivi1g01697 1 36517389 36520223 ECH