Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01696 ATGAAGGAAGAAGATAAAGTCCAAGAAACTGGACTTGAGTCTCAACTAGCTTCATGTTTTACTTCCTCTTGCAAAACTCTTGTTCTTGCTTCTAGGCCTGGCTATGGAAAACTTGGGACAAAGTGTGTTGTCAAAGCTAATCACTTTCTTGCAGATATATCAGTATCCGACTTGAGCCAATATGATGTTGTTATAACTCCTGAAGTTAACTCTAGAAAAACAAGAAAAGCTATCATAGCCGAGTTAGTGAAGCTTCATCGAAACACTGAGTTGGAAAATAGACTCCCGGCCTATGATGGCTCAAAGACTCTTTACACTTCCGGTCGGCTTCCGTTTACAAAGAAAGAGTTCAATATACTATTGAGTGAGGAGGATGAGAGAACTTGTAGTACAAGGGAAAGAACATTTGAAGTTCAAATCAAGTTTGCAGCTCATGTTAGCATGCATCAGTTACATGAGCTTCTCAGTGGGAAAAAAGTGGATACTCCACATGAAGCTCTTAATGTCATTGACATTGTATTGAAGGAGGTTGCATCTCATAGCTATGTATCGTTTGGGAGGTCATCGTATTCTCCGAATTTAAGAAAACCGCATACGCTGAGTGGTGGTTTGGAATCATGGCGCGGTTTCTATCAAAGTATTAAAGTAACTCAGATGGGATTATCACTTAATGTTGACATGTCATCCACGGCGTTTATCGAACCACTCCCTGTGATTGACTTTGTAGCTCTAGTATTAGGAAAAGATGTGCAGTTTAAGCCATTGTCAGACGCAGATCGCATCAAGATTAAAAAAGCCTTAAGAGGTGTGAAAGTCGAAATTACATATAGAGGAAGCGTTAGAAGGAAGTACAAGATAACAGGATTGACATCACAACCTACAAGGGAACTCATTTTCCCTTTGGATAAGCAAATGAACATGCAATCAGTAATTGATTACTTTCAAGAGAAGTATGAATATACAATCATGTATCCTCATTTACCTTGCCTTCAAGTAGGAAGCCAAGAGAGGTTGAACTATTTGCCTATGGAGGTATGCAAGATAGTTGGAGGTCAGAGATATTCAAAAGGGCTTAATGAGAAGCAAATAACTTCTCTGCTAAAGGTCTCGTGCCAGAGACCACCTGGAAGGGAGGATGATATTCTACAGACGATTCATCAAAATGATTATAATTGTAATCCTTATGCAAAGGAGTTTGGTATCAGCGTAGACAACAAGCTGGCATCAGTTGAGGCTCGTGTTCTTCCTGCTCCTTGGCTGAAATACCATGACACTGGAAGAGAGAACAAAATCCTGCCACAAATTGGTCAGTGGAACATGAATAACAAGAAAGTTATAAATGGAGGCAAAGTAACAAATTGGGCATGCATCAATTTCTCAAGAAATGTTCAAGAAAAACTAGCTAATGCATTTTGCCAAAATTTAGTTCAGGCATGCCAAATCTCAGGCATGGAATTTAGTCCGGAACCTGTGATTCCTGTATATTCAGCAAGACCGGATATGGTTAGGAAAGCCTTGGAGCATGTATGTTTTGTTTCTCGAAACAAACTTGGTGGGAAAGAGCTCGAGTTGCTCATTGCTATTCTTCCTGATAAAAACGGCTCTCTCTATGGTGATCTTAAAAAAATTTGCGAAACAGATCTCGGGTTGATTTCCCAATGTTGTCTTACAAAGTACGTATTCAAGATTGGTAGACAGTATTTGTCAAATGTAGCACTGAAGATCAATGTCAAGATGGGAGGAAGGAATGTAGTACTCATGGATGCTGTGAGTTCCAAGATTCCATTGGTTAGCGACATTCCAACGATAATTTTCGGAGCTGATGTAGCTCATCCCGACTCCGGAGAGGACGTTTGTCCATCCATTGCGGCAGTTGTAGCCTCGCAAGATTGGCCAGGAGTGAGCAAATATGCAGGCTTGGTATCTGCTCAGACACCTCGCGAGGAACTTATTCATGATCTTTTCAAATGTTGGAACGATCCACAGCATGGTATCGTTTACGGCGGCATGATCAGAGAGCTCTTGCTCTCATTTCAGAAGGCAACAGGAAAAAAACCACATAGGATAATATTTTACAGGGACGGGGTTGGTGATGGACAGTTCTACCAGGTTTTGCTATACGAGCTCGACGCAATCCGCAAGGCTTGTGCGTCTTTGGAACCTGGTTACCAACCACCAGTAACATTTGTCGTGGTTCAAAAACGGCATCACACTAGACTCTTCCCGAACAATCACAACGACAGAAACAGCACCGATAGAAGTGGGAATATCATGCCAGGTACCGTTGTGGATTCAAAGATATGTCATCCTACGGATTTCGACTTCTACTTGTGCAGTCACGCAGGAATTCAGGGTACAAGTAGAGCAGCTCATTATCATGTTATATGGGACGACAACAACTTCAGTGCGGATGAGATTCAGTCTTTAACTAACAACTTGTGCTACACTTATGCGAGATGTACGCGATCAGTTTCTGTAGTGCCTCCGGTGTATTATGCTCATCTGGCAGCTTATAGAGCTAGATTCTACATGGAACCTGCTGTCCATGAAAATGCAAAATCACACGCTACAAGATTGAAAGTTGAGTCAGTTCGGCCACTGCCAGCTCTAAAAGAAAAGGTCAAGAATGTAATGTTTTACTGTTGA 2646 0.4153 MKEEDKVQETGLESQLASCFTSSCKTLVLASRPGYGKLGTKCVVKANHFLADISVSDLSQYDVVITPEVNSRKTRKAIIAELVKLHRNTELENRLPAYDGSKTLYTSGRLPFTKKEFNILLSEEDERTCSTRERTFEVQIKFAAHVSMHQLHELLSGKKVDTPHEALNVIDIVLKEVASHSYVSFGRSSYSPNLRKPHTLSGGLESWRGFYQSIKVTQMGLSLNVDMSSTAFIEPLPVIDFVALVLGKDVQFKPLSDADRIKIKKALRGVKVEITYRGSVRRKYKITGLTSQPTRELIFPLDKQMNMQSVIDYFQEKYEYTIMYPHLPCLQVGSQERLNYLPMEVCKIVGGQRYSKGLNEKQITSLLKVSCQRPPGREDDILQTIHQNDYNCNPYAKEFGISVDNKLASVEARVLPAPWLKYHDTGRENKILPQIGQWNMNNKKVINGGKVTNWACINFSRNVQEKLANAFCQNLVQACQISGMEFSPEPVIPVYSARPDMVRKALEHVCFVSRNKLGGKELELLIAILPDKNGSLYGDLKKICETDLGLISQCCLTKYVFKIGRQYLSNVALKINVKMGGRNVVLMDAVSSKIPLVSDIPTIIFGADVAHPDSGEDVCPSIAAVVASQDWPGVSKYAGLVSAQTPREELIHDLFKCWNDPQHGIVYGGMIRELLLSFQKATGKKPHRIIFYRDGVGDGQFYQVLLYELDAIRKACASLEPGYQPPVTFVVVQKRHHTRLFPNNHNDRNSTDRSGNIMPGTVVDSKICHPTDFDFYLCSHAGIQGTSRAAHYHVIWDDNNFSADEIQSLTNNLCYTYARCTRSVSVVPPVYYAHLAAYRARFYMEPAVHENAKSHATRLKVESVRPLPALKEKVKNVMFYC 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01696 881 CDD Piwi_ago-like 394 844 IPR045246 -
Vivi1g01696 881 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
Vivi1g01696 881 Pfam Argonaute linker 1 domain 186 234 IPR014811 -
Vivi1g01696 881 Gene3D - 414 587 - -
Vivi1g01696 881 SMART DUF1785_2 183 235 IPR014811 -
Vivi1g01696 881 Pfam Mid domain of argonaute 433 509 IPR032473 -
Vivi1g01696 881 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 36 846 - -
Vivi1g01696 881 SUPERFAMILY Ribonuclease H-like 517 846 IPR012337 -
Vivi1g01696 881 SUPERFAMILY PAZ domain 230 391 IPR036085 GO:0005515
Vivi1g01696 881 CDD PAZ_argonaute_like 235 349 - -
Vivi1g01696 881 SMART Piwi_a_2 524 845 IPR003165 GO:0003676
Vivi1g01696 881 Gene3D - 593 881 IPR036397 GO:0003676
Vivi1g01696 881 SMART PAZ_2_a_3 240 372 IPR003100 GO:0005515
Vivi1g01696 881 Pfam N-terminal domain of argonaute 40 174 IPR032474 -
Vivi1g01696 881 FunFam Protein argonaute-2 229 355 - -
Vivi1g01696 881 Pfam PAZ domain 261 366 IPR003100 GO:0005515
Vivi1g01696 881 FunFam Argonaute 10 414 587 - -
Vivi1g01696 881 ProSiteProfiles PAZ domain profile. 236 350 IPR003100 GO:0005515
Vivi1g01696 881 ProSiteProfiles Piwi domain profile. 524 845 IPR003165 GO:0003676
Vivi1g01696 881 FunFam protein argonaute 10-like 593 881 - -
Vivi1g01696 881 Pfam Argonaute linker 2 domain 377 422 IPR032472 -
Vivi1g01696 881 Gene3D paz domain 229 354 - -
Vivi1g01696 881 Pfam Piwi domain 525 844 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01696 Vivi-Chr1 36480037 36485275 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01696 29 881 Eukaryotic Initiation Factors Gene Family AT5G43810 69.106 0.0 1288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g01696 1 36480037 36485275 Vivi1g01696 1 36480037 36485275 ECH