Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01678 ATGTTAGGGGAAGTGCAACTTCAGCCTCCACCTATTCAGCAAAACCCTAGTGATTCCGATCCTTTACTCGGTCGCAAAGACGAGGTTGTAGATGATGAGTCTCCCGGAAGTTCTACTGAGGTTATGAATCCGGAAGATGTTGAAGCTGGGTTGCTCCCTTGTTGTCGAATTTGCCTAGAGACTGATTCTGATCCCGAGGATGAATTGATTTCTCCATGCATGTGCAAAGGAACCCAACAGTTTGTCCATCGTTCATGTCTTGATCACTGGCGCTCAGTAAAGGAAGGGTTTGCCTTTTCACACTGCACCACCTGCAAAGCCCAATTTCATCTTAGAGTTGAAACGTTTGAGGACAACTCTTGGCGTAAAATAAAGTTCAGACTTTTTGTGGCAAGGGATGTTTTCCTTGTTTTCCTGGCCATACAAACTGTGATTGCTGCTATTGGTGGCTTCGCTTACATCATGGACAAAGATGGGAACTTCAGGAACTCTTTTGATGATGGGTGGGATAGGATACTGTCAAAGCATCCAATACCATTTTATTATTGTATCGGAGTGGTGGCCTTCTTTGTACTCATTGGATTTTTTGGCCTCATACTTCATTGCTCTTCCCTCAATAGCAATGACCCCAGAATGGCCGGTTGTCAAAACTGTTGTTACGGATGGGGCATCTTGGATTGCTTTCCCGCATCAATGGAGGCATGCTTTGCTCTTGTGGTTGTTTTTGTTGTCATCTTTGCAATTCTTGGTGTAGCTTATGGTTTTCTTGCAGCCACCATGGGAATTCAGAGAATTTGGCAGAGGCATTACCATATCCTAACCAAGAGGGAGCTTACAAAGGAATATGTAGTAGAAGATCTGCAGGGCTGCTACGTCCCACCCAAGTTAGACCCAGAACATGAGAGTCGCCTGAAAATGCTTAAGCTTTTGTGA 933 0.4469 MLGEVQLQPPPIQQNPSDSDPLLGRKDEVVDDESPGSSTEVMNPEDVEAGLLPCCRICLETDSDPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRVETFEDNSWRKIKFRLFVARDVFLVFLAIQTVIAAIGGFAYIMDKDGNFRNSFDDGWDRILSKHPIPFYYCIGVVAFFVLIGFFGLILHCSSLNSNDPRMAGCQNCCYGWGILDCFPASMEACFALVVVFVVIFAILGVAYGFLAATMGIQRIWQRHYHILTKRELTKEYVVEDLQGCYVPPKLDPEHESRLKMLKLL 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01678 310 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 42 119 IPR013083 -
Vivi1g01678 310 ProSiteProfiles Zinc finger RING-CH-type profile. 47 112 IPR011016 GO:0008270
Vivi1g01678 310 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 13 310 - -
Vivi1g01678 310 MobiDBLite consensus disorder prediction 1 43 - -
Vivi1g01678 310 CDD RING_CH-C4HC3_MARCH 55 106 - -
Vivi1g01678 310 Pfam RING-variant domain 55 105 IPR011016 GO:0008270
Vivi1g01678 310 SUPERFAMILY RING/U-box 53 110 - -
Vivi1g01678 310 SMART ringv_2 54 106 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01678 Vivi-Chr1 36133943 36138311 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01678 1 310 C3H Transcription Factor Family AT1G11020 78.193 3.04e-170 473
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01678 - - gmx:100782178 582.408