Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01677 ATGGTTCTCACCTTCTTTGTAGCTTTCATAGACAAAACTACCTATTTGTTCGTCGATAACCCGAAAAAGATTGCTTGGAGATACACAAGAACTTGGTTTGTATTGGATCTTATATCGATCATTCCTTCCGAACTTGTCGCGAGTCTTTCCCCTGCTCCTATCCAAACTTATGGCCTATTCAATATGCTTAGGCTTTGGCGACTTCGAAGAGTTAGTTCTTTATTTTCTCGGCTTGAGAAGGACAGAAACTTCAACTATTTTTGGGTTCGATGCGCAAAGCTCATTTGTGTTACTCTTTTTGCGGTGCATTGTGCTGGATGCTTTTATTATCTTCTTGCTGCGCGTTATCATGATCCTAAGAAGACGTGGATTGGCGAAACAATGGAAGATTTCCTTCATCAGAGTTTGTGGACAAGATACGTGACGACTATTTACTGGTCGATCACGACTTTGACAACAGTTGGATACGGAGATTTGCACCCGGTGAATGAAAGGGAAATGATTTTCGTCATCTTTTACATGCTCTTTAATCTAGGATTAACCGCGTATCTGATTGGTAACATGACTAACTTAGTCGTCCATGGCACAAGTCGAACTAGAAAATTCAGGGATACGATACAAGCCGCGTCAAGTTTTTCGCAGAGGAACCAATTGCCGCCTCGCTTACAAGATCAAATGCTTGCTCATTTGTGTTTGAAGTTTAGAACAGACTCCGAGGGGTTGCAGCAACAAGAGACGCTCGATTCTCTTCCGAAAGCTATCAGATCAAGCATTTCGCATTATCTTTTTTATAATTTGATGGATAAGGTCTATTTATTCAAAGGAGTTTCAAATGACTTGCTCTTCCAATTGGTATCTGAAATGAAGCCGGAGTATTTTCCACCGAAAGAAGATGTCATATTACAAAACGAAGCTCCAACCGATTTTTACATTCTAGTCACCGGAGCTGTGGACTTATTAGTTCTCAAAGGCGGGGTTGAACATGTTGTCGGGGAGGCAAAAACCGGAGAACTTTGTGGCGAAATCGGTGTACTTTGCTATAAGCCGCAACATTTTACCGTTCGAACTAAGCGATTAAGTCAACTGTTGAGGCTAAACCGTACCACCTTCATGAATATCGTTCAAGCTAATGTTGGCGACGGAACCATAATCATGAACAATCTTCTTCAGCATTTGAAAGAGCTTAACGATCCGATCATGGAGGGAGTTTTAGTAGAGACGGAAAACATGTTAGCTCGCGGTAGAATGGACTTACCGGTGAGTCTATGCTTTGCAGCATCAAGAGGAGATGATTTGTTGTTACATCAACTGCTAAAACGAGGTTTGGATCCAAATGAATCTGACAACAATGGAAGGACAACATTGCATATAGCAGCATGTAAAGGAAAAGAAAACTGTGTTTTGCTTCTGTTAGATTATGGGGCAAATCCCAACATTAGAGATTCAGATGGAAATGTAGCATTGTGGGAGGCTATACTTGGTGGACATGAAACAGTAACAAAACTTTTGGTACAAAATGGTGCTACCTTGCAAAGTGGTGATGTTGGTCAATATGCATGCACTGCTGCTGAACAAAACAATCTAAATTTATTACAAGACATTATGCGTTATGGCGGAGACATCTCACTTCCATGTACCAACGTTGGAACCACGGCTTTACATGTCGCGGTGTCCGAAGATAACGTAGAAATTGTCAAATTCCTCTTAGAAAATGGTGCTAACATTGATAAACCAGACAGATATGGTTGGACTCCAAGAGATTTAGCTGATCAACAAGGTCATGTAGAAATCAAAGCCATTTTTGAAGCCAAAGGAGAACAACCTAAGACTCAATCTTTTGTTTCTATGTCTATTCCTGAGAAGCAGGGTAGTGCTAATGTGAAGTACCTTGGTAGATTTACAAGTGAGCCAATAATACCTATGCCTCAAGATGGATCATTTCAAGGAAATGACGGTTCGTGGATTCCGATTCCGAATCGTCCGAGGCGTAGGACTAACAATTTTCACAACTCGCTATTCGGGATAATGTCGGCGGCAACAAAAGGAGAAAATGATCAGGTTTTCACTGTTAACATGAATAACAATGGAAGGAGTGGTGTGAAGAGTATTATGCGTCCAACGAGAATTACAATTAGTTGTCCGGAAAAAGGTGAGAATGCTGGAAAGCTTATATTGTTACCTGAAAGTTTTAAAGAGTTACTTGAGATTGGAGGTAAGAAATTTGGTATAGTTGTTAGTAAGGTTGTTTGCAAAGATGGAGCTGAAATTGATGATATTGAGGTTATTAGAGATGGTGACCATCTTGTTTTTGTTGGGGATGATGGAGTGCTAGATTCCAATTGTGTAACACAATGTAATGGTGTCATTCCCTAG 2373 0.4054 MVLTFFVAFIDKTTYLFVDNPKKIAWRYTRTWFVLDLISIIPSELVASLSPAPIQTYGLFNMLRLWRLRRVSSLFSRLEKDRNFNYFWVRCAKLICVTLFAVHCAGCFYYLLAARYHDPKKTWIGETMEDFLHQSLWTRYVTTIYWSITTLTTVGYGDLHPVNEREMIFVIFYMLFNLGLTAYLIGNMTNLVVHGTSRTRKFRDTIQAASSFSQRNQLPPRLQDQMLAHLCLKFRTDSEGLQQQETLDSLPKAIRSSISHYLFYNLMDKVYLFKGVSNDLLFQLVSEMKPEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKGGVEHVVGEAKTGELCGEIGVLCYKPQHFTVRTKRLSQLLRLNRTTFMNIVQANVGDGTIIMNNLLQHLKELNDPIMEGVLVETENMLARGRMDLPVSLCFAASRGDDLLLHQLLKRGLDPNESDNNGRTTLHIAACKGKENCVLLLLDYGANPNIRDSDGNVALWEAILGGHETVTKLLVQNGATLQSGDVGQYACTAAEQNNLNLLQDIMRYGGDISLPCTNVGTTALHVAVSEDNVEIVKFLLENGANIDKPDRYGWTPRDLADQQGHVEIKAIFEAKGEQPKTQSFVSMSIPEKQGSANVKYLGRFTSEPIIPMPQDGSFQGNDGSWIPIPNRPRRRTNNFHNSLFGIMSAATKGENDQVFTVNMNNNGRSGVKSIMRPTRITISCPEKGENAGKLILLPESFKELLEIGGKKFGIVVSKVVCKDGAEIDDIEVIRDGDHLVFVGDDGVLDSNCVTQCNGVIP 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01677 790 Gene3D Jelly Rolls 236 397 IPR014710 -
Vivi1g01677 790 SMART ANK_2a 548 577 IPR002110 GO:0005515
Vivi1g01677 790 SMART ANK_2a 450 479 IPR002110 GO:0005515
Vivi1g01677 790 SMART ANK_2a 483 512 IPR002110 GO:0005515
Vivi1g01677 790 SMART ANK_2a 417 446 IPR002110 GO:0005515
Vivi1g01677 790 Pfam Ankyrin repeats (3 copies) 422 511 IPR002110 GO:0005515
Vivi1g01677 790 Gene3D - 1 193 - -
Vivi1g01677 790 ProSiteProfiles KHA domain profile. 708 788 IPR021789 -
Vivi1g01677 790 Pfam Ankyrin repeats (many copies) 538 589 IPR002110 GO:0005515
Vivi1g01677 790 Gene3D - 418 602 IPR036770 -
Vivi1g01677 790 ProSiteProfiles Ankyrin repeat profile. 483 515 IPR002110 GO:0005515
Vivi1g01677 790 SUPERFAMILY Voltage-gated potassium channels 2 193 - -
Vivi1g01677 790 Pfam Cyclic nucleotide-binding domain 291 376 IPR000595 -
Vivi1g01677 790 SMART cnmp_10 272 389 IPR000595 -
Vivi1g01677 790 CDD CAP_ED 272 377 IPR000595 -
Vivi1g01677 790 ProSiteProfiles Ankyrin repeat profile. 548 580 IPR002110 GO:0005515
Vivi1g01677 790 SUPERFAMILY Ankyrin repeat 421 603 IPR036770 -
Vivi1g01677 790 SUPERFAMILY cAMP-binding domain-like 197 392 IPR018490 -
Vivi1g01677 790 ProSiteProfiles Ankyrin repeat region circular profile. 548 580 - -
Vivi1g01677 790 FunFam Potassium channel KAT3 1 194 - -
Vivi1g01677 790 ProSiteProfiles Ankyrin repeat region circular profile. 450 481 - -
Vivi1g01677 790 PRINTS Ankyrin repeat signature 451 466 IPR002110 GO:0005515
Vivi1g01677 790 PRINTS Ankyrin repeat signature 564 578 IPR002110 GO:0005515
Vivi1g01677 790 Pfam KHA, dimerisation domain of potassium ion channel 708 770 IPR021789 -
Vivi1g01677 790 FunFam Potassium channel KAT2 260 396 - -
Vivi1g01677 790 PRINTS EAG/ELK/ERG potassium channel family signature 140 157 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vivi1g01677 790 PRINTS EAG/ELK/ERG potassium channel family signature 166 177 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vivi1g01677 790 PRINTS EAG/ELK/ERG potassium channel family signature 184 193 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vivi1g01677 790 PRINTS EAG/ELK/ERG potassium channel family signature 1 10 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vivi1g01677 790 ProSiteProfiles Ankyrin repeat profile. 450 482 IPR002110 GO:0005515
Vivi1g01677 790 Pfam Ion transport protein 1 199 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vivi1g01677 790 ProSiteProfiles cAMP/cGMP binding motif profile. 272 374 IPR000595 -
Vivi1g01677 790 PANTHER POTASSIUM CHANNEL AKT1 1 772 IPR045319 GO:0005249|GO:0006813
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01677 Vivi-Chr1 36124207 36130091 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01677 3 773 Ion Channels AT2G26650 68.305 0.0 1090
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01677 K21867 - gmx:100819491 1242.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g01677 1 36124207 36130091 Vivi1g01677 1 36124207 36130091 ECH