Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01662 ATGAAGAACAATGTGGGGAGAGAGTTTGTAGCAGGTGGATTTGGAGGCACGACAGGTATCATAGCGAGTTATCCGTTGGATACTCTTCGTGTCATGCAACAACAGTCCGGGAAGGCTTCTGCTGTTGGCATCCTTAGAAACTTGTTGGCTAAGGAAGGACCTTCTGCTCTTTATCGTGGCATGGCAGTTCCTTTGGCTTCTGTTGGTTTTCAGAATGCTATGATTTTTCAAAGTTATTCTATTTTTACGAGGATTTGTAGTCCTTCAATTTCATCCAATGGACCTCCTTCCCTTGTGAATGTTGTTTTGGGAGGACTCGGTGCAGGTGCTATCCAAAGTATGTTGATGTCTCCCGTTGAGTTAGTTAAAATTCGTATGCAGCTTCAAAAAAATGTTGACAATTTTTCAGAAAACAAAAAGAACACTCCTTTAATATTAGCTAAGAACATTTGGAAAAATGAAGGCCTTTGTGGCATTTATCGAGGATTTGGCATCACAGTTCTTAGAGATGCACCTGCCCTTGCCTTCTACTTTGGAGCATATGAGTACACGAGGGAGAAACTCAACCCTGGTTGTAGAGACAGTTGTCAAGAAAGTGTGCATACTATGTTCATAGCAGGAGGGGTAGCAGGGATAGCAAGTTGGATTTTTAACTATCCTACAGATGTTATAAAGACTAGATTGCAAGCTCAAACATCATCTTCATTGAAATACAAAGGTATCTTGGATTGCGCCTTAAAGATAATCAAAGAAGAAGGTTTGATTGTGTTATGGCGGGGTTTAGGAGCAACACTTGTTCGAGCATTTATTATGAATAGTGCTATATTTCCAACTTATCAAGTCACTTTAAGGTGTTTGACCAACAATTAA 870 0.4011 MKNNVGREFVAGGFGGTTGIIASYPLDTLRVMQQQSGKASAVGILRNLLAKEGPSALYRGMAVPLASVGFQNAMIFQSYSIFTRICSPSISSNGPPSLVNVVLGGLGAGAIQSMLMSPVELVKIRMQLQKNVDNFSENKKNTPLILAKNIWKNEGLCGIYRGFGITVLRDAPALAFYFGAYEYTREKLNPGCRDSCQESVHTMFIAGGVAGIASWIFNYPTDVIKTRLQAQTSSSLKYKGILDCALKIIKEEGLIVLWRGLGATLVRAFIMNSAIFPTYQVTLRCLTNN 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01662 289 ProSiteProfiles Solute carrier (Solcar) repeat profile. 3 85 IPR018108 -
Vivi1g01662 289 Pfam Mitochondrial carrier protein 4 85 IPR018108 -
Vivi1g01662 289 Pfam Mitochondrial carrier protein 199 288 IPR018108 -
Vivi1g01662 289 Pfam Mitochondrial carrier protein 97 189 IPR018108 -
Vivi1g01662 289 ProSiteProfiles Solute carrier (Solcar) repeat profile. 96 187 IPR018108 -
Vivi1g01662 289 Gene3D Mitochondrial carrier domain 1 289 IPR023395 -
Vivi1g01662 289 SUPERFAMILY Mitochondrial carrier 4 279 IPR023395 -
Vivi1g01662 289 PRINTS Mitochondrial carrier protein signature 160 178 IPR002067 GO:0055085
Vivi1g01662 289 PRINTS Mitochondrial carrier protein signature 8 21 IPR002067 GO:0055085
Vivi1g01662 289 PRINTS Mitochondrial carrier protein signature 21 35 IPR002067 GO:0055085
Vivi1g01662 289 PRINTS Mitochondrial carrier protein signature 207 229 IPR002067 GO:0055085
Vivi1g01662 289 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 4 286 - -
Vivi1g01662 289 ProSiteProfiles Solute carrier (Solcar) repeat profile. 198 285 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01662 Vivi-Chr1 35306798 35310624 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01662 1 289 Antiporters AT1G79900 57.586 1.12e-106 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01662 K15109 - gmx:100801221 359.762