Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01641 ATGAGCCATTCCAACAACATTCCAACGTTCAAGATGTCACCATTCTCATCATCCAGCAGCAGCGATATCATTGAAGTGACGCCTCAATTCCCGATGACGATGAGCAACGAACGCTATGAACACAATCAGCGCTCTGAACCACGTTCAGCATCCGACGGTTCCCATTCCTTCATAAGGACAAGAGTTCCGGACAACATGCAACCCAATGCGCGGATGGGCCCTCCAACAAACCGAGAAACGGGCAACATTTTCTTCAAAACCCGTATTTGTACTAAGTTCGGGTTTGGTACCTGTAGAAACGGTCAAAATTGTACCTTTGCTCATGGGGCTGATGATATAAGAAGGCCACCGCCGAACTGGCAGGAGCTTGTCGGTCCTCGCACCGAAGAACGGCTGCAATTGGGTGGGAATGGGAATTGGAGTGATGATCAAAAAATCATTCATAAGATGAAGCTGTGCAAGAAGTATTGCAATGGGGAGGAATGTCCTTATGGGGATAAGTGTAACTTTCTTCATGAGGATCCAGCCAAGTTTAGGGACGATTCATGGAAACCAAGAGAGTACTCTGCAATCAACATTGAAACTTCTAATAATTCAGAAGGCAGTAGGGCTGGAACTAAGCAGGAAAAGGGCACTTATTGGAAGACTAAGATGTGTCTCAGGTGGTTGAATACCGGGAGCTGTCCCTTTGGTGATGGCTGTCACTTTGCTCATGGAGATGCAGAGTTACAAGTTCCTGGTGGAGACATTGAAGATGAAGCTGCAGTTGCCATAGCAAATTCAACAAGAGTTGTCGTTCCAACTTTACCAACAACAGGTTCTTCTGCCAATTATGCGCCTACTACTTTACCAGCAAATGTACCTGCGACAACGGACGAAGAGAGGAAGGCTAAGAAGGAATTACTTTGGAAGAAATTAAACAAGATCAACCGTATTTATGGCGATTGGATTGATGATTTACCTCCAGACTTGCCAAGTACAACAGAGCCTTGA 993 0.4562 MSHSNNIPTFKMSPFSSSSSSDIIEVTPQFPMTMSNERYEHNQRSEPRSASDGSHSFIRTRVPDNMQPNARMGPPTNRETGNIFFKTRICTKFGFGTCRNGQNCTFAHGADDIRRPPPNWQELVGPRTEERLQLGGNGNWSDDQKIIHKMKLCKKYCNGEECPYGDKCNFLHEDPAKFRDDSWKPREYSAINIETSNNSEGSRAGTKQEKGTYWKTKMCLRWLNTGSCPFGDGCHFAHGDAELQVPGGDIEDEAAVAIANSTRVVVPTLPTTGSSANYAPTTLPANVPATTDEERKAKKELLWKKLNKINRIYGDWIDDLPPDLPSTTEP 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01641 330 FunFam Zinc finger CCCH domain-containing protein 39 144 176 - -
Vivi1g01641 330 MobiDBLite consensus disorder prediction 1 79 - -
Vivi1g01641 330 ProSiteProfiles Zinc finger C3H1-type profile. 84 111 IPR000571 GO:0046872
Vivi1g01641 330 SMART c3hfinal6 213 240 IPR000571 GO:0046872
Vivi1g01641 330 SMART c3hfinal6 147 174 IPR000571 GO:0046872
Vivi1g01641 330 SMART c3hfinal6 84 110 IPR000571 GO:0046872
Vivi1g01641 330 MobiDBLite consensus disorder prediction 49 63 - -
Vivi1g01641 330 FunFam Zinc finger CCCH domain-containing protein 208 245 - -
Vivi1g01641 330 SUPERFAMILY CCCH zinc finger 147 174 IPR036855 GO:0046872
Vivi1g01641 330 Pfam CCCH-type zinc finger 151 172 IPR041367 -
Vivi1g01641 330 ProSiteProfiles Zinc finger C3H1-type profile. 147 175 IPR000571 GO:0046872
Vivi1g01641 330 PANTHER CCCH ZINC FINGER/TIS11-RELATED 36 175 IPR045877 GO:0003729
Vivi1g01641 330 ProSiteProfiles Zinc finger C3H1-type profile. 213 241 IPR000571 GO:0046872
Vivi1g01641 330 MobiDBLite consensus disorder prediction 1 38 - -
Vivi1g01641 330 SUPERFAMILY CCCH zinc finger 212 244 IPR036855 GO:0046872
Vivi1g01641 330 Pfam RNA-binding, Nab2-type zinc finger 90 109 - -
Vivi1g01641 330 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 214 239 IPR000571 GO:0046872
Vivi1g01641 330 SUPERFAMILY CCCH zinc finger 83 115 IPR036855 GO:0046872
Vivi1g01641 330 Gene3D - 144 176 - -
Vivi1g01641 330 Gene3D - 77 115 - -
Vivi1g01641 330 Gene3D - 205 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01641 Vivi-Chr1 34655138 34659140 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01641 215 244 C3H Transcription Factor Family AT1G68200 56.667 1.58e-06 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vivi1g01641 zf-CCCH 1.8e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01641 - - psat:127135234 488.419