Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01639 ATGAGTAATTCAGAAAACATTCCAACGTTCAAGATGTCACCTTTCTCATCATCCAGCAGCAGCGATATCATTGACGTGACGCCTCAATTCCCGATGAGCAACCAACGCTTTGAACACAATCAGCGCTTTGAACCACGTTCAGCATCCGATGGTTTCCATTCCTTCAGAAGGACAAGAGTTCCGGACAACAATCAGTCCAATGCACTGATGGGTCCTCCAACAAACAGAGGAGCGAGCAACATTTTCTTCAAGACCCGTATTTGTACTAAGTTCGGGTTTGGTACCTGTAGAAACGGTCAAAATTGTACCTTTGCTCACGGGGTTGATGAGCTAAGACGGCCACCACCAAACTGGCAGGAGCTTGTTGGTCCTCGCACTGAAGAACGGCTGCAATTGGGTGGAAATTGGAGTGATGATCAAAAAATCATTCACAGGATGAAGCTGTGCAAGAAGTATTGCAATGGGGAGGAATGTCCTTATGGTGATAAGTGTAACTTTCTTCATGAGGATCCAGCCAAGTATAGGGACGACTCTTGGAAAACAAGAGAGTTCTCTGAAATCAGCATAGGAACTTCTAATAATTTGGAAGGCAGTAGGGCTGGAACTAAGCAGGAAAGGGGCACTTATTGGAAGACTAAGACCTGTCTCATGTGGATCAATACCGGGAGCTGCCCCTTTGGTGATGGATGCCACTTTGCTCATGGAGATGCAGAGTTACAAATTCCTGTTCCTGGTGGAGGCATTGAAGCTGAAGCTGAAGCTGCAGCTGCCATAGCAAATTCAACAAATGATGTCATTCCAACATTACCAACAACAGGTTCTTCTGTCAATTATGCACCTACTACCTTACCGGCAAATGTACCTGTGGCGACGGATGAGGAGAAGAAGGCCAAGAAGGAATTACTTTGGAAGAAATTAAACAAGATCAACCGTATTTATGGCGATTGGATTGATGATTTATCTCCCGACTTGCCAAGTACCGCGGAGCCCTGA 993 0.4562 MSNSENIPTFKMSPFSSSSSSDIIDVTPQFPMSNQRFEHNQRFEPRSASDGFHSFRRTRVPDNNQSNALMGPPTNRGASNIFFKTRICTKFGFGTCRNGQNCTFAHGVDELRRPPPNWQELVGPRTEERLQLGGNWSDDQKIIHRMKLCKKYCNGEECPYGDKCNFLHEDPAKYRDDSWKTREFSEISIGTSNNLEGSRAGTKQERGTYWKTKTCLMWINTGSCPFGDGCHFAHGDAELQIPVPGGGIEAEAEAAAAIANSTNDVIPTLPTTGSSVNYAPTTLPANVPVATDEEKKAKKELLWKKLNKINRIYGDWIDDLSPDLPSTAEP 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01639 330 MobiDBLite consensus disorder prediction 1 22 - -
Vivi1g01639 330 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 210 235 IPR000571 GO:0046872
Vivi1g01639 330 MobiDBLite consensus disorder prediction 58 75 - -
Vivi1g01639 330 ProSiteProfiles Zinc finger C3H1-type profile. 143 171 IPR000571 GO:0046872
Vivi1g01639 330 SMART c3hfinal6 143 170 IPR000571 GO:0046872
Vivi1g01639 330 SMART c3hfinal6 209 236 IPR000571 GO:0046872
Vivi1g01639 330 SMART c3hfinal6 82 108 IPR000571 GO:0046872
Vivi1g01639 330 ProSiteProfiles Zinc finger C3H1-type profile. 209 237 IPR000571 GO:0046872
Vivi1g01639 330 SUPERFAMILY CCCH zinc finger 208 240 IPR036855 GO:0046872
Vivi1g01639 330 MobiDBLite consensus disorder prediction 45 75 - -
Vivi1g01639 330 PANTHER CCCH ZINC FINGER/TIS11-RELATED 29 171 IPR045877 GO:0003729
Vivi1g01639 330 Gene3D - 77 113 - -
Vivi1g01639 330 Gene3D - 201 241 - -
Vivi1g01639 330 Gene3D - 143 172 - -
Vivi1g01639 330 ProSiteProfiles Zinc finger C3H1-type profile. 82 109 IPR000571 GO:0046872
Vivi1g01639 330 Pfam CCCH-type zinc finger 147 168 IPR041367 -
Vivi1g01639 330 Pfam RNA-binding, Nab2-type zinc finger 88 107 - -
Vivi1g01639 330 SUPERFAMILY CCCH zinc finger 143 170 IPR036855 GO:0046872
Vivi1g01639 330 SUPERFAMILY CCCH zinc finger 81 113 IPR036855 GO:0046872
Vivi1g01639 330 FunFam Zinc finger CCCH domain-containing protein 39 140 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01639 Vivi-Chr1 34640588 34643634 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vivi1g01639 zf-CCCH 2.1e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01639 - - psat:127073579 457.988