Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01638 ATGAGTTATTCAGAAAATATTCCAACGTCCAAGATGTCACCATTCTCATCATCCAGCAGCAGCGATATCATTGAGGTCACGCCCCAATTCCCGATCAGCAACCAATGCTTTGAAGCAGGTTCAGCATCGGATGGTTCCCAGTCCTTCAGAAGGACTAGAGTTCCGGACAACAAGCAATCCAATGCAATGAATCACCCTCCATCAAACGGAGGAACGGGCAACATTTTCTTCAAGACCCGTACTTGTATCAAGTTCGGGTTTGGTACCTGTCGAAACGGTGAAAATTGTACCTTTGCTCATGGGGACGATGAAATTAGACAGCCGTTTGGTACCTGTCGAAACGGTGAAAATTGTACCTTTGCTCATGGGGACGATGAAATTAGACAGCCACCCGCAAACTGGCAGGAGCTTGTTAGTCCTCGTACAGATGAACGGCTGCAATTGGGCGAGAATTGGAAGGAAGACCAGAAAATCATTCATAAGATGAGGCTGTGCAAGAAGTATTGCAATGGCGAGGAATGCCCTTATGGAGATAAGTGTAACTTTCTTCATGAGGATCCTGCCAAGTATAGGGACGATTCTTGGAAAAAAAGAGAATCCTCTGCAATCAGCATTGAGACTTCTAATCATTTGGAAGGCAGTAGGGCTGGAACTAAGCAGGAAAGGGGCGCATATTGGAAGACTAAGATCTGTCTCAGGTGGTTGAATACCGGAAGCTGTCCCTTTGGTGATGGCTGTCACTTTGCTCATGGAAATGCAGAGTTACAAGTTCCTGGTGGAGGCATTGAAGCGGAAGCTGCGGTTGCTATAGCAAATTCAACAAAAGCTGTCGTTCCAACTTTACCAACTACTGATTCTTCTGCTAATTATGCACCTACCTTACCTGCAAGTGTGCCTGCGGCGACGGAAGAGGAGAAGAAAGCCAAGAAGGAATTACTTTGGAAGAAATTAAACAAGATCAACCGTATTTATGGCGATTGGATTGATGACTTACCTTCCGACTTGCCAAGTACAGCGGAGCCCTGA 1026 0.4591 MSYSENIPTSKMSPFSSSSSSDIIEVTPQFPISNQCFEAGSASDGSQSFRRTRVPDNKQSNAMNHPPSNGGTGNIFFKTRTCIKFGFGTCRNGENCTFAHGDDEIRQPFGTCRNGENCTFAHGDDEIRQPPANWQELVSPRTDERLQLGENWKEDQKIIHKMRLCKKYCNGEECPYGDKCNFLHEDPAKYRDDSWKKRESSAISIETSNHLEGSRAGTKQERGAYWKTKICLRWLNTGSCPFGDGCHFAHGNAELQVPGGGIEAEAAVAIANSTKAVVPTLPTTDSSANYAPTLPASVPAATEEEKKAKKELLWKKLNKINRIYGDWIDDLPSDLPSTAEP 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01638 341 SUPERFAMILY CCCH zinc finger 159 186 IPR036855 GO:0046872
Vivi1g01638 341 Pfam RNA-binding, Nab2-type zinc finger 109 123 - -
Vivi1g01638 341 Pfam RNA-binding, Nab2-type zinc finger 84 101 - -
Vivi1g01638 341 SMART c3hfinal6 159 186 IPR000571 GO:0046872
Vivi1g01638 341 SMART c3hfinal6 104 124 IPR000571 GO:0046872
Vivi1g01638 341 SMART c3hfinal6 225 252 IPR000571 GO:0046872
Vivi1g01638 341 SMART c3hfinal6 76 102 IPR000571 GO:0046872
Vivi1g01638 341 PANTHER CCCH ZINC FINGER/TIS11-RELATED 110 187 IPR045877 GO:0003729
Vivi1g01638 341 ProSiteProfiles Zinc finger C3H1-type profile. 225 253 IPR000571 GO:0046872
Vivi1g01638 341 FunFam Zinc finger CCCH domain-containing protein 39 156 188 - -
Vivi1g01638 341 Pfam CCCH-type zinc finger 163 184 IPR041367 -
Vivi1g01638 341 MobiDBLite consensus disorder prediction 1 21 - -
Vivi1g01638 341 ProSiteProfiles Zinc finger C3H1-type profile. 159 187 IPR000571 GO:0046872
Vivi1g01638 341 ProSiteProfiles Zinc finger C3H1-type profile. 110 125 IPR000571 GO:0046872
Vivi1g01638 341 ProSiteProfiles Zinc finger C3H1-type profile. 76 103 IPR000571 GO:0046872
Vivi1g01638 341 FunFam Zinc finger CCCH domain-containing protein 220 257 - -
Vivi1g01638 341 SUPERFAMILY CCCH zinc finger 225 256 IPR036855 GO:0046872
Vivi1g01638 341 MobiDBLite consensus disorder prediction 40 71 - -
Vivi1g01638 341 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 226 251 IPR000571 GO:0046872
Vivi1g01638 341 SUPERFAMILY CCCH zinc finger 75 107 IPR036855 GO:0046872
Vivi1g01638 341 Gene3D - 108 130 - -
Vivi1g01638 341 Gene3D - 72 107 - -
Vivi1g01638 341 Gene3D - 217 257 - -
Vivi1g01638 341 Gene3D - 156 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01638 Vivi-Chr1 34635337 34638221 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01638 227 256 C3H Transcription Factor Family AT1G68200 56.667 2.69e-06 46.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vivi1g01638 zf-CCCH 1.1e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01638 - - psat:127135234 438.728