Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01637 ATGACTGACCCAGACAAGGTTCCAATCTTTAACATGCCACCACCGCCATTCGCCTCATCCAACACCGATATCAATAATATGAGGCCTCAATTCCCAATGAACAATGAACGCTTCGAACCATCTTCATCATTGGATCGTTCCCATTCCTTCAACAGGCCAAGAATTTCTGACAACAAGCATTCCAACGAATTGATGGGCCCTCCTTCAAGGATGAATCATCCTCCATCAAACAGACCAACCGACAACATTTTCTTCAAGACCCGTCTTTGTTCTAACTACAGTTTAGGTAGCTGCAGAAAAGGTGAATATTGTAGCTATGCTCATGGGAAAGAAGAGTTAAGGAAGCCACCGCCAAACTGGCAGGAGCTCGAACGGCTGCAATTGGGTGGGAATAGGGAAAATTATAGCTCTCTTCACGAGGATACTGCTAAGTTTAGGAATGATTCTGGGGAAACAAGAGAGTCCTCTGCAATCGTCATTGAGACTATTGGTAATAATTTTGAAGGCAATAAGACTGGGACCAAGCCACCTAGGGGCACTTGTTGGAAGACTAGGATCTGTCCCAAGTGGAAGGATACCCGAAGCTGCTCCTTAGGTGATTACTGTAACTATGCTCATGGAGATGCAGATTTACGAATTCCTGGTGGAGGCATTGAAACTGCATTTGCTATATCAAATTCATCAAAAGCTGGCATTCCAACTTTACGAACTACAGGTTCTTCTGCCAAGTATGCACCTACCTTACCATCAAGTGTTGCTATAGCAAATTCATCAAAAGCTGTCATTCCAACTTTACGAACTACAGGTTCTACTGCCAAGTATCTACCTGCCGTGCTAGCAAGTGCACCTGCGGAGACGGAAGAAGAGAAGAAGGCCAAGAAGGAATTACTTAGGAATAAAAAATTAAACAAGGTCAACCGTATTTATGGCGATTGGATTGATGATTTACCTCCCGATCGTCCTGATTTGCCAAGAGAGCCCTGA 984 0.4411 MTDPDKVPIFNMPPPPFASSNTDINNMRPQFPMNNERFEPSSSLDRSHSFNRPRISDNKHSNELMGPPSRMNHPPSNRPTDNIFFKTRLCSNYSLGSCRKGEYCSYAHGKEELRKPPPNWQELERLQLGGNRENYSSLHEDTAKFRNDSGETRESSAIVIETIGNNFEGNKTGTKPPRGTCWKTRICPKWKDTRSCSLGDYCNYAHGDADLRIPGGGIETAFAISNSSKAGIPTLRTTGSSAKYAPTLPSSVAIANSSKAVIPTLRTTGSTAKYLPAVLASAPAETEEEKKAKKELLRNKKLNKVNRIYGDWIDDLPPDRPDLPREP 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01637 327 MobiDBLite consensus disorder prediction 16 49 - -
Vivi1g01637 327 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 182 207 IPR000571 GO:0046872
Vivi1g01637 327 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 85 110 IPR000571 GO:0046872
Vivi1g01637 327 SUPERFAMILY CCCH zinc finger 181 212 IPR036855 GO:0046872
Vivi1g01637 327 MobiDBLite consensus disorder prediction 1 80 - -
Vivi1g01637 327 ProSiteProfiles Zinc finger C3H1-type profile. 84 111 IPR000571 GO:0046872
Vivi1g01637 327 PANTHER CCCH ZINC FINGER/TIS11-RELATED 29 119 IPR045877 GO:0003729
Vivi1g01637 327 SMART c3hfinal6 84 110 IPR000571 GO:0046872
Vivi1g01637 327 SMART c3hfinal6 181 208 IPR000571 GO:0046872
Vivi1g01637 327 SUPERFAMILY CCCH zinc finger 82 115 IPR036855 GO:0046872
Vivi1g01637 327 Gene3D - 78 115 - -
Vivi1g01637 327 Gene3D - 177 213 - -
Vivi1g01637 327 ProSiteProfiles Zinc finger C3H1-type profile. 182 209 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01637 Vivi-Chr1 34631930 34633908 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vivi1g01637 zf-CCCH 8.5e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01637 - - vvo:131611873 619.387