Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01636 ATGACTTATCCAGACAACATTCCAACCGTTAGGATGTCACCACCGCAATTCGCCACATCAAACATCAATATCAATAGAATGAGGCCTCAATTCCCAATGAACAGTGAACGATTTGAACAACGTTCAGAAATGGATAGTTCACATTCCTTCAAACGGCCAAGAATATCTGACAACAACCATTCCAATGCACTGATCAACCCTCCTCCAAGGATGAATCATCCTCCACCAAACAGACGACCGGGCAACATTTTCTTCAAGACTCGCATTTGTTTTGATTTCGAGTTTGGTACCTGTAGAAACGGTGAAAATTGTAGCTTTGCTCATGGGGTTGAAGAATTAAGGCAGCCACCACCAAACTGGCAGGAGGTTGTCCGTCCTCGTACTGAAGAACGGCTGCAATTGGGCGGGAATTGGAATGATGATCAGAAAATCATTCACAAGATGAATCTTTGCAAGAAGTATTACAATGGGGAGGAATGCCCTTATGGTGATAATTGTCGCTTTCTTCACAAGGATCCTGCTAAGTTTGGAGACGATTCTTGGAAAACAAGAAGAGAGTCCTCTTCATTCAGCAATTCAACTATTGGTAATAACTTGGAAGACAATAAGACTGTGACCAAGCCACCTAGGGGCTCTTATTGGAAGACTAAGCCGTGTCTTGAGTGGAAGCATACCAGGAGCTGTCCCTTTGGTGATGGCTGTCACTTTGCTCATGGAGATGCAGGTAATAAGATTGATTGTTTGCCTTTAAATTTAATGTCCGACTCATTAATAATTGGGAGGCAGTACATTGCTCATTTGCAAGTTTTATATTGCGTCCGTGTCACAATCCTTAATATTGCTATTAAACATGAGTTACAAGTTCCTGGTGGAGGTATTGAAGCGGAAGCTGCAGTTGCTATAGCAAATTCAACAAAAGCTGTCATTCCAACTTTACCAACTACAGGTTTTTCTGCTAATTATGTACACACCTTACCGGCAAGTGTATCTGCGGCGACGGAAGAGGAGAAGAAAGCCAAGAAGGAATTACTTTGGAAGAAATTAAACAAGATCAACCGTATTTATGGCGATTGGATTGACGATTTACGTCCCGATCGCCCTGATTTGCCAAGGGAGCCCTGA 1122 0.426 MTYPDNIPTVRMSPPQFATSNININRMRPQFPMNSERFEQRSEMDSSHSFKRPRISDNNHSNALINPPPRMNHPPPNRRPGNIFFKTRICFDFEFGTCRNGENCSFAHGVEELRQPPPNWQEVVRPRTEERLQLGGNWNDDQKIIHKMNLCKKYYNGEECPYGDNCRFLHKDPAKFGDDSWKTRRESSSFSNSTIGNNLEDNKTVTKPPRGSYWKTKPCLEWKHTRSCPFGDGCHFAHGDAGNKIDCLPLNLMSDSLIIGRQYIAHLQVLYCVRVTILNIAIKHELQVPGGGIEAEAAVAIANSTKAVIPTLPTTGFSANYVHTLPASVSAATEEEKKAKKELLWKKLNKINRIYGDWIDDLRPDRPDLPREP 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01636 373 SMART c3hfinal6 84 110 IPR000571 GO:0046872
Vivi1g01636 373 SMART c3hfinal6 213 240 IPR000571 GO:0046872
Vivi1g01636 373 SMART c3hfinal6 145 172 IPR000571 GO:0046872
Vivi1g01636 373 PANTHER CCCH ZINC FINGER/TIS11-RELATED 46 173 IPR045877 GO:0003729
Vivi1g01636 373 MobiDBLite consensus disorder prediction 38 55 - -
Vivi1g01636 373 ProSiteProfiles Zinc finger C3H1-type profile. 150 173 IPR000571 GO:0046872
Vivi1g01636 373 Pfam CCCH-type zinc finger 150 170 IPR041367 -
Vivi1g01636 373 SUPERFAMILY CCCH zinc finger 83 115 IPR036855 GO:0046872
Vivi1g01636 373 Gene3D - 209 242 - -
Vivi1g01636 373 Gene3D - 142 173 - -
Vivi1g01636 373 Gene3D - 81 115 - -
Vivi1g01636 373 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 214 239 IPR000571 GO:0046872
Vivi1g01636 373 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 85 109 IPR000571 GO:0046872
Vivi1g01636 373 MobiDBLite consensus disorder prediction 38 79 - -
Vivi1g01636 373 SUPERFAMILY CCCH zinc finger 213 240 IPR036855 GO:0046872
Vivi1g01636 373 ProSiteProfiles Zinc finger C3H1-type profile. 84 111 IPR000571 GO:0046872
Vivi1g01636 373 MobiDBLite consensus disorder prediction 187 205 - -
Vivi1g01636 373 SUPERFAMILY CCCH zinc finger 145 172 IPR036855 GO:0046872
Vivi1g01636 373 ProSiteProfiles Zinc finger C3H1-type profile. 213 241 IPR000571 GO:0046872
Vivi1g01636 373 MobiDBLite consensus disorder prediction 187 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01636 Vivi-Chr1 34627801 34630846 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01636 86 170 C3H Transcription Factor Family AT1G68200 34.483 2.17e-06 47.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vivi1g01636 zf-CCCH 2.4e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01636 - - vvo:131611766 724.931