Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01635 ATGACTTATCCAGACCACATTCCAACCGTTAGGATGTCACCGCCGCAATTCACCACATCAAACATTGATATCAATAGAATGAGGCCTCAATTCCCAATGAACAGTGAACAATTTGAACCGCGTTCAGAAATGGATAGTTCACATTCCTTCAAACGGCCAAGAATGTCTGACAACAACCATTCTAATGCACTGATGAAGCCTCCTCCAAGGATGAATCATCCTCCACCAAACAGACGACCGGGCAACATTTTCTTCAAGACTCGCATTTGTTTTGATTTCGGGTTTGGTAGCTGTAGAAACGGTGAAAACTGTAGCTTTGCTCATGGGGTTGAAGAATTAAGGCAGCCACCACCAAACTGGCAGGAGGTTGTCCGTTCTCGTACTGAAAAACGGCTGCAATTGAGCGGGAATTGGAATGATGATCAGAAAATCATTCACAAGATGAATCTTTGCAAGAAGTATTACAATGGGGAGGAATGCCCTTATGGTGATAATTGTCGCTTTCTTCACAAGGATCCTGCTAAGTTTGGAGACGATTCTTGGAAAACAAGAAAAGAGTCCTCTTCAATCAGCAATTCAACTATTGGTAATAACTTGGAAGACAATATGACTGTGACCAAGCCACCTAGGGGCTCTTATTGGAAGACTAAGCCGTGTCTCGAGTGGAAGCATACCAGGAGCTGTCCCTTTGGTGATTGCTGTCACTTTACTCATGGAGATGCAGAGGTACAAGTTCCTGGTGGAGGCGTTGAAGCTGAAGCTGCAGTTACCATAGAAAATTCAACAAAAGCTGCCATTCCAACACTACCTGCAAGTGTACCAGAGGCGAAGGAAGATGAGAAGAAGACTAAGAAGCATTTACTTTGGTTGAAATTAAACAAGATAAATCGCATCTATGGTGATTGGATTGATGATTGA 918 0.4314 MTYPDHIPTVRMSPPQFTTSNIDINRMRPQFPMNSEQFEPRSEMDSSHSFKRPRMSDNNHSNALMKPPPRMNHPPPNRRPGNIFFKTRICFDFGFGSCRNGENCSFAHGVEELRQPPPNWQEVVRSRTEKRLQLSGNWNDDQKIIHKMNLCKKYYNGEECPYGDNCRFLHKDPAKFGDDSWKTRKESSSISNSTIGNNLEDNMTVTKPPRGSYWKTKPCLEWKHTRSCPFGDCCHFTHGDAEVQVPGGGVEAEAAVTIENSTKAAIPTLPASVPEAKEDEKKTKKHLLWLKLNKINRIYGDWIDD 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01635 305 SMART c3hfinal6 145 172 IPR000571 GO:0046872
Vivi1g01635 305 SMART c3hfinal6 213 240 IPR000571 GO:0046872
Vivi1g01635 305 SMART c3hfinal6 84 110 IPR000571 GO:0046872
Vivi1g01635 305 SUPERFAMILY CCCH zinc finger 213 244 IPR036855 GO:0046872
Vivi1g01635 305 Pfam CCCH-type zinc finger 150 170 IPR041367 -
Vivi1g01635 305 MobiDBLite consensus disorder prediction 41 55 - -
Vivi1g01635 305 MobiDBLite consensus disorder prediction 33 79 - -
Vivi1g01635 305 PANTHER CCCH ZINC FINGER/TIS11-RELATED 34 173 IPR045877 GO:0003729
Vivi1g01635 305 ProSiteProfiles Zinc finger C3H1-type profile. 150 173 IPR000571 GO:0046872
Vivi1g01635 305 ProSiteProfiles Zinc finger C3H1-type profile. 84 111 IPR000571 GO:0046872
Vivi1g01635 305 SUPERFAMILY CCCH zinc finger 145 172 IPR036855 GO:0046872
Vivi1g01635 305 MobiDBLite consensus disorder prediction 1 21 - -
Vivi1g01635 305 Gene3D - 142 173 - -
Vivi1g01635 305 Gene3D - 209 245 - -
Vivi1g01635 305 Gene3D - 81 115 - -
Vivi1g01635 305 SUPERFAMILY CCCH zinc finger 83 115 IPR036855 GO:0046872
Vivi1g01635 305 ProSiteProfiles Zinc finger C3H1-type profile. 213 241 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01635 Vivi-Chr1 34624654 34626776 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vivi1g01635 zf-CCCH_4 7.9e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01635 - - vvo:131611766 549.666