Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01634 ATGAGTTATTCGGATATCGTTCCAACTTTTACGATGTCACCGCCGCAATTCTCATCATCCAGCACGTCGGATCATTCCCATTCCTTCATAAGGACAAGAGTTTCCGACAAATATCATTCCAATGCATTGATGGGTCCTCCACCAAGCCGAGGAAGGAGCAACATTTTCTTCAAGACCCGTATTTGTATCAAGTTCGGGTTTGGTAGCTGTAGAAACGGTCAAAACTGTAGCTTTGCTCATGGGGTAGAAGATATAAGGCAGCCACCACCAAACTGGCAGGAGCTTGTCCGTCCACGTACTGAAGAACGTCTGCAATTGGGGGGGAATTCGAATGATGATCAGAAAATCATTCACAAGATGAAGCTGTGCAAGAAGTATTGCAATGGTGAACAATGTCCTTATGGTGATAAGTGTAACTTTCTTCATGAGGATCCTGCCAAGTTTAGGGATGACTCTTGGAAAACAAGAGAGTCCTCTGCAATCAGCGCTGGAACTTTTGGGGATGGTTCTAATAATTTGGAAGGCAATAGGGTTGGGACTGAGCCAGCAAGGGGCACTTATTCAAAGACTAAGATGTGTCTCAGGTGGTTGAATACCGGTAGCTGCCCCTTTGATGATAATTGTCATTTTGCTCATGGAGATGCAGAGTTACAAGCTCCTGGAGGAGCCATTGAAGCTGAAGCCGCAGTTGCCATTGCAAACTCAACAAAAGCTACTACATCACCGGCAAGTGTACCTGCGGCGACAGAAGAGGAGAAGAAGACCAAGAAGGAATTACTTTGGTTGAAATTAAACAAGATCAACCGTATTTATGGTGATTGGATTGATGATTTACCTCTCGGTCGTCCTGATTTGCCAAGGGAGCCCTGA 870 0.4517 MSYSDIVPTFTMSPPQFSSSSTSDHSHSFIRTRVSDKYHSNALMGPPPSRGRSNIFFKTRICIKFGFGSCRNGQNCSFAHGVEDIRQPPPNWQELVRPRTEERLQLGGNSNDDQKIIHKMKLCKKYCNGEQCPYGDKCNFLHEDPAKFRDDSWKTRESSAISAGTFGDGSNNLEGNRVGTEPARGTYSKTKMCLRWLNTGSCPFDDNCHFAHGDAELQAPGGAIEAEAAVAIANSTKATTSPASVPAATEEEKKTKKELLWLKLNKINRIYGDWIDDLPLGRPDLPREP 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01634 289 SUPERFAMILY CCCH zinc finger 55 87 IPR036855 GO:0046872
Vivi1g01634 289 FunFam Zinc finger CCCH domain-containing protein 183 219 - -
Vivi1g01634 289 SUPERFAMILY CCCH zinc finger 117 144 IPR036855 GO:0046872
Vivi1g01634 289 Gene3D - 50 87 - -
Vivi1g01634 289 Gene3D - 114 146 - -
Vivi1g01634 289 Gene3D - 183 219 - -
Vivi1g01634 289 MobiDBLite consensus disorder prediction 161 182 - -
Vivi1g01634 289 PANTHER CCCH ZINC FINGER/TIS11-RELATED 11 147 IPR045877 GO:0003729
Vivi1g01634 289 MobiDBLite consensus disorder prediction 161 177 - -
Vivi1g01634 289 Pfam RNA-binding, Nab2-type zinc finger 64 81 - -
Vivi1g01634 289 ProSiteProfiles Zinc finger C3H1-type profile. 56 83 IPR000571 GO:0046872
Vivi1g01634 289 SMART c3hfinal6 117 144 IPR000571 GO:0046872
Vivi1g01634 289 SMART c3hfinal6 189 214 IPR000571 GO:0046872
Vivi1g01634 289 SMART c3hfinal6 56 82 IPR000571 GO:0046872
Vivi1g01634 289 ProSiteProfiles Zinc finger C3H1-type profile. 187 215 IPR000571 GO:0046872
Vivi1g01634 289 ProSiteProfiles Zinc finger C3H1-type profile. 117 145 IPR000571 GO:0046872
Vivi1g01634 289 SUPERFAMILY CCCH zinc finger 187 218 IPR036855 GO:0046872
Vivi1g01634 289 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 189 213 IPR000571 GO:0046872
Vivi1g01634 289 FunFam Zinc finger CCCH domain-containing protein 39 114 146 - -
Vivi1g01634 289 Pfam CCCH-type zinc finger 121 142 IPR041367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01634 Vivi-Chr1 34607500 34609869 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01634 188 218 C3H Transcription Factor Family AT1G68200 51.613 4.14e-06 45.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vivi1g01634 zf-CCCH 2.6e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01634 - - psat:127073579 383.259
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g01634 1 34607500 34609869 Vivi1g01634 1 34607500 34609869 ECH