Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01633 ATGAGTTATCCATACAATGTTCCAACCTCTAGGATGTCACCACCGCAATTCGCCTCCTCGTCCAGCGACGCCATTGAAGTGAGGCCTCAATTTCCAATGAACAATGAACGATTTGAACCGGGTTCAACCATGGATATTTCCCATTCCTTCAAAAGGCCAAGAATGTCTGACAACAGCCATTCCAATACAATCACGGGCCCTCCTCCAAGGATGAATCACCCTCCACCAAACAGACCAACGGGCAACATTTTCTTCAAGACCCGCATTTGTACCAAGTTCGGGTTTGGCACCTGTAGAAACGGTGAAAATTGTACCTTTGCTCATGGGGTTGACGAGATAAGGAAGCCACCCCCAAACTGGCAGGAGCTTGTCCGTCCTCGTATGCAATTGGGCGGGAATTCGAATGATGATCAGAAAGTCATTCCCACTGAAGAACGGATGCAATTGGGCAGGAATTGGAATGATGATCAGAAAATCATTCACGAGATGAAACTTTGCAAGAAGTATTACAATGGGGAGGAATGTCCTTATGGTGATAAGTGTAACTTTCTTCATGAGGATCCTGCTATGTTTAGGGACGACTCTTGTGAAACAAGAGAGTCCTCTGCAATCAGTATTGCAACTTTTAATAATTTGGGAGGCAATAGGGCTGGGACTATGCCAGCAAGGGGCACTTATTGGAAGACTAAGATTTGTCACAAGTGGATGAATACCGGGAGCTGTCCCTTTGGTGATAACTGTCACTATGTTCATGCAGATGCAGAGGCACAAGTTCCAATTCCTGGTGGAGGTATTGAAGCTGAAGCTGCAGTAGCCATAGCGAATTCAGCAAAAGATGTCATTCCAACTTTACCAACAATAGGTTATTCTGTCAATAATGCACCTACTACCTTACCGGCAAATGTACCAGTGGTGACGGAAGAGGAGAAGAAGGCCAAGAAGGAATTACTTTGGAAGAAATTAAACAAGATCAACCGTATTTATGGCGATTGGATTGATGATTAA 1005 0.4458 MSYPYNVPTSRMSPPQFASSSSDAIEVRPQFPMNNERFEPGSTMDISHSFKRPRMSDNSHSNTITGPPPRMNHPPPNRPTGNIFFKTRICTKFGFGTCRNGENCTFAHGVDEIRKPPPNWQELVRPRMQLGGNSNDDQKVIPTEERMQLGRNWNDDQKIIHEMKLCKKYYNGEECPYGDKCNFLHEDPAMFRDDSCETRESSAISIATFNNLGGNRAGTMPARGTYWKTKICHKWMNTGSCPFGDNCHYVHADAEAQVPIPGGGIEAEAAVAIANSAKDVIPTLPTIGYSVNNAPTTLPANVPVVTEEEKKAKKELLWKKLNKINRIYGDWIDD 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01633 334 ProSiteProfiles Zinc finger C3H1-type profile. 226 254 IPR000571 GO:0046872
Vivi1g01633 334 MobiDBLite consensus disorder prediction 50 79 - -
Vivi1g01633 334 Pfam CCCH-type zinc finger 164 185 IPR041367 -
Vivi1g01633 334 SUPERFAMILY CCCH zinc finger 160 187 IPR036855 GO:0046872
Vivi1g01633 334 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 85 109 IPR000571 GO:0046872
Vivi1g01633 334 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 227 251 IPR000571 GO:0046872
Vivi1g01633 334 FunFam Zinc finger CCCH domain-containing protein 39 157 189 - -
Vivi1g01633 334 SMART c3hfinal6 161 187 IPR000571 GO:0046872
Vivi1g01633 334 SMART c3hfinal6 84 110 IPR000571 GO:0046872
Vivi1g01633 334 SMART c3hfinal6 226 253 IPR000571 GO:0046872
Vivi1g01633 334 SUPERFAMILY CCCH zinc finger 225 257 IPR036855 GO:0046872
Vivi1g01633 334 Gene3D - 222 258 - -
Vivi1g01633 334 Gene3D - 79 115 - -
Vivi1g01633 334 Gene3D - 161 188 - -
Vivi1g01633 334 ProSiteProfiles Zinc finger C3H1-type profile. 84 111 IPR000571 GO:0046872
Vivi1g01633 334 SUPERFAMILY CCCH zinc finger 83 115 IPR036855 GO:0046872
Vivi1g01633 334 MobiDBLite consensus disorder prediction 1 23 - -
Vivi1g01633 334 PANTHER CCCH ZINC FINGER/TIS11-RELATED 224 257 IPR045877 GO:0003729
Vivi1g01633 334 ProSiteProfiles Zinc finger C3H1-type profile. 165 188 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01633 Vivi-Chr1 34597863 34600790 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vivi1g01633 zf-CCCH 7.9e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01633 - - psat:127073579 442.965