Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01625 ATGGACGAAGATTTACTCAAGCGTAACACCGATTGCGTTTATTTCTTGGCTTCACCTCTCACTTGCAAGAAGGGTGTGGAGTGTGAGTATAGGCACCATGAGATTGCGAGGCTTAACCCAAGGGATTGCTGGTACTGGTTATCGGGGAATTGTCTTAATCCGACTTGTGCTTTTAGACACCCTCCATTGGATGGGCATGCTGGAGTGCCATCTGAACCTATACAATCTTCTGTACCTGCATCTGCAAACAAGACAATGGTTCCCTGTTATTTTTTCTTCAATGGATTTTGCAACAAAGGTAGCAAATGCTCATTTTCTCATAAGCCTGATGATAGCTTGCTCGTTGTAAAGCCTTCGAAGAATGACGTGGTAAAGCCTTCGAAGAATGACATTGTAAAGCCTTTGAAAAGTGACACTGTAAAGCCTTTGAAAAGTGACACTGTAAAGCCTTTGAAGAGTGACACTGTAAAGCCTTTGAAAAATGACACTGTAAAGCCTTTGAAGAATGATACTGTAAAGCCTTTGAAGAATGGCAACGGAAGCATTAATGCTCTCAACTTAGAAAATAAAGCTTCATCAGGAAATAAAACATCTGTAGCATCAACACCAAGGGAAACAAATTTTGAGCAATCTTTATCTGCTCCAAAAGCTTTGTCTGATATTAGACTTAAGTCTAAGGAAGATCTTCAGCTACCATTACCCGAAAATGTTAAACAGCAAAGTGTTTGCTTGGAATTTTCTTCATTTGACTATAACGAAGCTGCTGTGACTACTCAGTCAGACTCTCTGGTACCAGACAATGGTTTTGCTCATAATATGTCTCATTCATGCTCTGAGCAGAGTTCGGAGGAGCAGGAAAATTGTCATGTAGAGCCTGAGGAACGGTGGGAATCCTCCCCTGGATTTGATGTTCTTGTTCATGATGAAACCGAGAACCTGGGTTATGAGAATGGTTCTGAATATTTGCCACTGCTTGATATGGATGACCACGAACTGAATGAGCATTATACAGGGTATGAATTCAAAAATACAGATGAGTACGACACCATCTGCTCAGATGCTGATATTCTGTATGAACAGGGAACATGTGATGATTACAGATGTTTTGATAGAGATTTTTCCAGTGAAAGGGAAGTTTGTGGTTATTCCAGAGAGATAGCATTGGATTCTATATTTTCCAGGAAAAGGGTTCGGATTTCAGCTGCTGCGATGGATGCTTGTGACTCTGACTTAGATCTACGTGACCATCTGAGAAGACGAAGGGAGGTCAATGATCCTCCTGTCACTGATTTCTTAAGACATGATGAGCCATCTTCTTTGATGGTTCGAAACCAAGAAAGGCATCGAAGGGGCGACATTATTCAGAGACCAAATAGAAGGTTAACATCACAATTAGGATTTAGTTCAATCAGAGAGGTTGAAGATCCTTCAATTGCTAACAATAACAAGCACAGGTTATTTAGGCCTTCTCAGCAAAATTGGCCTTCCCAGCAAAATAGGCCAAGAAAGCATTATAGAGAAAAACCAGCTAGACGGCCATTTCCTTCATCTAAAGTATCCCGGAAACCATTTGTAAAGCTGCAGAGAGTTATTAAGGAATCCAGTGCATTTTCAGGGCCCAAGACTCTTGCAGAAATAAAAGAAGAAAGGAAGAAGAAGGCTGGTGAAAGTTCACATTGTGAAAGCTCGTCAGCTGGTTTCCAGGATCCCAAACCACTGCATGAAATTCTCAAAGACAGAAGGACCATGGACTGA 1755 0.412 MDEDLLKRNTDCVYFLASPLTCKKGVECEYRHHEIARLNPRDCWYWLSGNCLNPTCAFRHPPLDGHAGVPSEPIQSSVPASANKTMVPCYFFFNGFCNKGSKCSFSHKPDDSLLVVKPSKNDVVKPSKNDIVKPLKSDTVKPLKSDTVKPLKSDTVKPLKNDTVKPLKNDTVKPLKNGNGSINALNLENKASSGNKTSVASTPRETNFEQSLSAPKALSDIRLKSKEDLQLPLPENVKQQSVCLEFSSFDYNEAAVTTQSDSLVPDNGFAHNMSHSCSEQSSEEQENCHVEPEERWESSPGFDVLVHDETENLGYENGSEYLPLLDMDDHELNEHYTGYEFKNTDEYDTICSDADILYEQGTCDDYRCFDRDFSSEREVCGYSREIALDSIFSRKRVRISAAAMDACDSDLDLRDHLRRRREVNDPPVTDFLRHDEPSSLMVRNQERHRRGDIIQRPNRRLTSQLGFSSIREVEDPSIANNNKHRLFRPSQQNWPSQQNRPRKHYREKPARRPFPSSKVSRKPFVKLQRVIKESSAFSGPKTLAEIKEERKKKAGESSHCESSSAGFQDPKPLHEILKDRRTMD 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01625 584 MobiDBLite consensus disorder prediction 472 521 - -
Vivi1g01625 584 MobiDBLite consensus disorder prediction 536 584 - -
Vivi1g01625 584 Pfam RNA-binding, Nab2-type zinc finger 88 107 - -
Vivi1g01625 584 Gene3D - 75 142 - -
Vivi1g01625 584 Gene3D - 3 63 - -
Vivi1g01625 584 ProSiteProfiles Zinc finger C3H1-type profile. 37 63 IPR000571 GO:0046872
Vivi1g01625 584 ProSiteProfiles Zinc finger C3H1-type profile. 83 110 IPR000571 GO:0046872
Vivi1g01625 584 MobiDBLite consensus disorder prediction 483 499 - -
Vivi1g01625 584 MobiDBLite consensus disorder prediction 175 213 - -
Vivi1g01625 584 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 1 583 - -
Vivi1g01625 584 ProSiteProfiles Zinc finger C3H1-type profile. 6 35 IPR000571 GO:0046872
Vivi1g01625 584 SMART c3hfinal6 39 62 IPR000571 GO:0046872
Vivi1g01625 584 SMART c3hfinal6 83 109 IPR000571 GO:0046872
Vivi1g01625 584 SMART c3hfinal6 7 34 IPR000571 GO:0046872
Vivi1g01625 584 MobiDBLite consensus disorder prediction 543 558 - -
Vivi1g01625 584 FunFam Zinc finger CCCH domain-containing protein 17 1 63 - -
Vivi1g01625 584 SUPERFAMILY CCCH zinc finger 83 108 IPR036855 GO:0046872
Vivi1g01625 584 Pfam Zinc-finger containing family 7 63 IPR041686 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01625 Vivi-Chr1 34498885 34502489 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vivi1g01625 zf-CCCH_3 4.2e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01625 - - mtr:11438142 838.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g01625 1 34498885 34502489 Vivi1g01625 1 34498885 34502489 ECH