Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01624 ATGTCTACAAAAGTTGTAACTGCCGTACCACCCAAGATCACTGCAGTTTCTGCAATTGTTCCTGGCAAGTTTGAGTTTCGTCTAAGGGTTCGTGTGATTCACTATTGGACACTTCCTGAACGCTACAACTCTACAGATATAGGAAGTTTGCATATGATCTTGCTAGATGATAAGTGCGGCAAAATTCAGGCCACCGTTAGAAAGAATTTGATTCCTACATTTAAGGAGCAGATTGAAGTAGGTTCCTCATACGTGTTTGAAAATCTTATGGTGGGTAGCAACCACCCTTCCTACAAAGCTACGACACATAAGTACAAACTGAATTTCATGCAATCAACTAAAGTATTCAAAGTTAATGCTCCTGATATACCTCAATATCATTTTGATTTCATACCTTTCTCTGAAATTTTGAGTGCTACTAAAGAAGACAGGTTACTTGATATTATTGGCCATGTTGTGGAAACAAATGTCGTCAATGAAGTTGAGAAAAATGGAAAAAAGAGTAAGGTTATGGATCTGACTATTGAAGATTTAGAGAGCAACAAAATTCATTGCACATTGTGGGAGGATTTTGCAGAAATGATGCAGAAATTTATGGACAACCATAAATCTTCTGATCCAATAATCATGATACTTCAATTATGCAAACTGAAAAAGTTTTTTGGTGCTATGGGAGTCTCTAATGCTTACTATGGAACTAAAATGATGTTGAATGCGGATTTGATAGACACTGCTAATTATATATCTAAGATGAATGGTACTGAGATAGAAATCACACAAGGAGTGAGTCAAATGTCTGGTCCAACAATTGTCCCTCTAGCAGATGACTTGCTCCAGACACAAAAAATGACAATTGAGAACTTGATAGAATCCACTGAGAAATGTGTTGGTACTGTTCTAGCAAGAACATGTGAACTTGAGACAGATCTTGGATGGTATTATCAAGCTTGCACAAAGTGTGCATCAAAGGTTACTACTAGAACTGGGGTTATTTACTGTGATAAATGCCAGCAACCAAGGACCGCTATTCCTAGGTTCAAGGTTAATGTTCAAGTAATTGATAATTCTGGATCAACAACTTTTACTCTCTTTGATAGGGTGGTTTCTCAAGCTTTGGGAAGAAATGTACAAGATCTGTTGGATAACATGAATCATGATTTAGCTTATCCACCGGAGCTTGATGTATTTGTGGACAAACGAATGTTGTTTAAGGTAGAAGTTACTGATGCCAATTTGTTTCGTAATTGGCGCAATTATACTGTGAAGAAGTTGACTGAAGACGGGGAGATGATCAATCAGTTTTTAACATTGCATGGGATAAATTTGAATGATGTGGGTATAGATGCTGAATGTGTTCAGATAGGAGGTGAAGTTGCTGATAATAATGTTATGGAGGCAATTGAAGGTGGTGATTCAAACAAAGAGGAATTGACTACTGCAGATTCTGGAAATACACCTACAAGCAAGATATTGGGGAAGAGGTTGTCTGATAGTCCTGAATCAATTGCTGTGAATGATATCAACGGTGGTGCTTCATCGGTTGTTAAAGATTCTAAATGTGTAAAGCTTGAAAAATCTGATTGA 1584 0.3718 MSTKVVTAVPPKITAVSAIVPGKFEFRLRVRVIHYWTLPERYNSTDIGSLHMILLDDKCGKIQATVRKNLIPTFKEQIEVGSSYVFENLMVGSNHPSYKATTHKYKLNFMQSTKVFKVNAPDIPQYHFDFIPFSEILSATKEDRLLDIIGHVVETNVVNEVEKNGKKSKVMDLTIEDLESNKIHCTLWEDFAEMMQKFMDNHKSSDPIIMILQLCKLKKFFGAMGVSNAYYGTKMMLNADLIDTANYISKMNGTEIEITQGVSQMSGPTIVPLADDLLQTQKMTIENLIESTEKCVGTVLARTCELETDLGWYYQACTKCASKVTTRTGVIYCDKCQQPRTAIPRFKVNVQVIDNSGSTTFTLFDRVVSQALGRNVQDLLDNMNHDLAYPPELDVFVDKRMLFKVEVTDANLFRNWRNYTVKKLTEDGEMINQFLTLHGINLNDVGIDAECVQIGGEVADNNVMEAIEGGDSNKEELTTADSGNTPTSKILGKRLSDSPESIAVNDINGGASSVVKDSKCVKLEKSD 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01624 527 Pfam Domain of unknown function DUF223 52 140 IPR003871 -
Vivi1g01624 527 Gene3D - 11 117 IPR012340 -
Vivi1g01624 527 CDD RPA1_DBD_C 286 433 IPR047192 -
Vivi1g01624 527 MobiDBLite consensus disorder prediction 476 493 - -
Vivi1g01624 527 CDD RPA1_DBD_A_like 27 115 - -
Vivi1g01624 527 PANTHER OS03G0429900 PROTEIN 15 415 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vivi1g01624 527 SUPERFAMILY Nucleic acid-binding proteins 287 426 IPR012340 -
Vivi1g01624 527 SUPERFAMILY Nucleic acid-binding proteins 127 249 IPR012340 -
Vivi1g01624 527 Gene3D - 121 259 IPR012340 -
Vivi1g01624 527 CDD RPA1_DBD_B_like 147 249 - -
Vivi1g01624 527 Pfam Replication factor-A C terminal domain 306 386 IPR013955 -
Vivi1g01624 527 SUPERFAMILY Nucleic acid-binding proteins 12 118 IPR012340 -
Vivi1g01624 527 Gene3D - 273 435 IPR012340 -
Vivi1g01624 527 MobiDBLite consensus disorder prediction 471 493 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01624 Vivi-Chr1 34423269 34426063 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01624 9 373 Core DNA Replication Machinery Family AT2G06510 25.193 3.09e-16 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01624 - - vvo:131659456 676.396