Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01618 ATGGCTTGGTCTGATTCAACTACTCAGAAACAATCTCGTCCCTCTCAACCGCTTTACGTTCCTCAATTCCGTTCTAACGCTCCTTCTCCCTATAACAACAACCGAACCCATTTTCCACCGTCCGATGACGTTTCATCTCACTACTCTTTCAATCGCTCCACTCACAGGCCACGTGGCAGAGGCGGTTACGCTTACGGTTACGGACCTCCACGTCATTTCCCTCGACCGGAACAACAACCACGGAACTTCAACTACAGCCACGATCCTCCTCCTCATCCTCCTCATCCTCATCCTCCTCATCGGAACAATCGCGCTCCGGTTGAGACCCACATTGAGCCGGAAAATGGAGTCGGCGTCGTTGCGAATGCGAATGCGAATTTCGAAGCGTATGAATCTATCCCGGTTGAGGCTACTGGCGAGAACGTGCCTCCGCCGGTGAATGTGTTTGCTGAAACCGAACTTCATGAGGATTTGAAGAATAATATTGAGAGATGTAAGTATGTGAAACCTACTCCGGTTCAGAGGTACGCGATCCCCATTGCTGTTGCTGGGAGAGACCTTATGGCGTGTGCTCAGACTGGGTCGGGTAAAACGGCGGCGTTTTGTTTTCCGATTATATCTGGGATTATGAAAGATCGTTTAGCTTCTGGGGTGGCGTCTGTGCCACGTGGCGGTGGTTCCGATGTTGCGTACCCCACTGCACTCATCTTGTCTCCAACTAGGGAGTTATCATGCCAGATACACGCTGAAGCAAACAAGTTTGCATATCAAACAGGAGTGAAGATTGCGGTTGCTTATGGGGGTGCTCCTATTGGTCAACAGTTAAGGGTTTTGGAGAGAGGTGTTGATATTTTGGTTGCGACTCCTGGGCGTTTGGTGGATATGATTGAGAGGGAAAGAGTTTCGTTGAAGAAGATTAAGTATCTTGCTTTGGATGAGGCTGATCGGATGCTGGACATGGGTTTTGAGCATCAGATTCGCAACATTGTTCAGCAGATGAACATGCCTCCTCCAGGTGATAGACAGACATTGCTTTTCAGTGCTACCTTTCCTGATAATATACAGAAGCTTGCATCTGATTTTTTGTCAAACTATGTGTTTCTGGCTGTTGGAAGGGTTGGTTCAAGCACTGAACTGATTGTACAGAAAATTGAATCTGTACAGGATATGGAGAAAAGAAATCGTCTTGTGGATCTTCTCCGACGCAATGTTGTCAATGGGAAGCTGGCTTTATCTCTTATATTTGTTGAAACAAAGAAAGGAGCAGATGCTTTAGAAAGTTGGCTGTGCAGAAGTGGTTTTCCAGCTATTGCAATACATGGTGACAAGGTTCAAATGGAGCGGGAGCGAGCTTTGAGATCTTTTAAACGTGGTCTTACTCCAATAATGGTTGCAACAGATGTTGCTTCTAGAGGATTGGATATACCTCACGTGGCTCATGTTATTAACTTTGACTTACCGAGAGACATTGATGACTATGTACATAGAATTGGTAGAACTGGCCGTGCTGGTCAGTCTGGTTTAGCAACTGCTTTCTTCAGCAGCAAAAACATGCCTCTTGCAAAGGGTCTTGTTGGACTTTTGCAAGAAGCAAAACAAGAAGTTCCTTCTTGGCTAATCCAATATTCCGAGTCTTCAGCACCTGGTGGTCGCAGCAGCTTTGGATCTCAACGGTCACCCTGGAGAGGCAATTATGGAGGGCGCGATTTCCGTACTGCAGCAGAACCTATAATGGTTGAGAGTTACAACAACTACAATAGTAATTACAGCAATTATGGTGGTAATGGTTTCCATAATGTTCCCGAACAGGTGCAGAATTACAACTTCAACAGCACCTACAGCAACGGAGACCATACTGCCAATACTTATACTGATACCTCGTTAGACATCCAAAACTCTAACAACAATACTGCTTTTGACAGCACTAATACAGAGATTGCTGGTGGTTACAATTATGCTGATGTTGGTTTGTGTGAAGGCAGTGATGGCATAAATGGGCCATCTGGTTATGCATCTGTTGTGCCCACTGGATGGGACTGA 2040 0.4598 MAWSDSTTQKQSRPSQPLYVPQFRSNAPSPYNNNRTHFPPSDDVSSHYSFNRSTHRPRGRGGYAYGYGPPRHFPRPEQQPRNFNYSHDPPPHPPHPHPPHRNNRAPVETHIEPENGVGVVANANANFEAYESIPVEATGENVPPPVNVFAETELHEDLKNNIERCKYVKPTPVQRYAIPIAVAGRDLMACAQTGSGKTAAFCFPIISGIMKDRLASGVASVPRGGGSDVAYPTALILSPTRELSCQIHAEANKFAYQTGVKIAVAYGGAPIGQQLRVLERGVDILVATPGRLVDMIERERVSLKKIKYLALDEADRMLDMGFEHQIRNIVQQMNMPPPGDRQTLLFSATFPDNIQKLASDFLSNYVFLAVGRVGSSTELIVQKIESVQDMEKRNRLVDLLRRNVVNGKLALSLIFVETKKGADALESWLCRSGFPAIAIHGDKVQMERERALRSFKRGLTPIMVATDVASRGLDIPHVAHVINFDLPRDIDDYVHRIGRTGRAGQSGLATAFFSSKNMPLAKGLVGLLQEAKQEVPSWLIQYSESSAPGGRSSFGSQRSPWRGNYGGRDFRTAAEPIMVESYNNYNSNYSNYGGNGFHNVPEQVQNYNFNSTYSNGDHTANTYTDTSLDIQNSNNNTAFDSTNTEIAGGYNYADVGLCEGSDGINGPSGYASVVPTGWD 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01618 679 Gene3D - 370 546 IPR027417 -
Vivi1g01618 679 MobiDBLite consensus disorder prediction 1 52 - -
Vivi1g01618 679 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 178 368 IPR014001 -
Vivi1g01618 679 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 122 542 - -
Vivi1g01618 679 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 233 518 IPR027417 -
Vivi1g01618 679 SMART ultradead3 166 383 IPR014001 -
Vivi1g01618 679 CDD DEADc_DDX3_DDX4 149 374 IPR044763 GO:0003724|GO:0005524
Vivi1g01618 679 Pfam Helicase conserved C-terminal domain 392 504 IPR001650 -
Vivi1g01618 679 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 403 543 IPR001650 -
Vivi1g01618 679 Pfam DEAD/DEAH box helicase 171 357 IPR011545 GO:0003676|GO:0005524
Vivi1g01618 679 MobiDBLite consensus disorder prediction 1 107 - -
Vivi1g01618 679 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 147 175 IPR014014 GO:0003724
Vivi1g01618 679 CDD SF2_C_DEAD 380 513 - -
Vivi1g01618 679 FunFam ATP-dependent RNA helicase RhlB 371 547 - -
Vivi1g01618 679 Gene3D - 112 369 IPR027417 -
Vivi1g01618 679 FunFam Probable ATP-dependent RNA helicase DDX4 111 370 - -
Vivi1g01618 679 SMART helicmild6 423 504 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01618 Vivi-Chr1 34349299 34352856 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01618 145 524 Eukaryotic Initiation Factors Gene Family AT3G19760 33.071 1.40e-60 207