Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01614 ATGGCTTCGAGATTCTGGACCCAGGCTGGTAGTGATTCTGAAGATGAAGAGAGTGATTACGATGGGGAGGTTGAAGAAGTAGAAGGTGAATCCGGCCCCGATCCTACTAAAACCAATTACTACCTTCAAGGTAATGCTAGTGACAGCGATGACTCTGACGGCCAAAAGCGTGTCGTTCGATCGGCAAAAGATAAACGATACGAGGAGATGGCTTCAACTGTTGATCAGATGAAGAATGCGACGAAGATTAACGATTGGGTGAGTTTGCAGGAGAGTTTTGACAAGATTAACAAACAGCTCGAGAAAGTCATGCGTGTGGCGGAGACTGATAAGGTTCCGAGTCTTTATATTAAGGCTCTTGTTATGTTGGAGGATTTCTTGGCTCAGGCTTTGGCTAATAAGGATGCTAAGAAGAAGATGAGTAGTAGTAATGCGAAAGCTTTGAACTCGATGAAGCAGAAGTTGAAGAAGAATAATAAGCAATATGAGGAGTTGATTAATAAGTGTAGGGAGAGTCCCGAGAGTGAGGAGGAGAAGGTTGAGGATGAGGAGAGCGAGGAGGAAGATGAAAGTGATGGGGAGATTATTGAGCCTGAACAGCTTCGGAAGCGGGAGCTTAAATCGGATTCGGAAGTTGAGTACGAAGATGGAAAGGATGATGCTGGTGAAGGAGGTTGGGATCAAAAGCTTAGCAAGAAAGATAGGCTTTTGGATAGACAGCTCATGAAAGATCCAAGGGAGGTTACATGGGATATTGTTAATAAGAAGTTCAAGGAGATTGTGGCGGCTAGGGGTAGGAAGGGAACTGGGAGGTTTGAACAGGTTGAGCAGCTTACCTTCTTAACAAAAGTGGCTAAAACACCTGCACAGAAGCTTGAGATTCTTTTCAGTGTGGTTTCTGCTCAGTTTGATGTTAATCCAGGACTCAGTGGCCATATGCCGATAACTGTGTGGAAAAAATGTGTTCAGAATATGCTACTCATCCTTGATATTCTAGTTCAGTTTCCAAACATAAAGGTTGATGATTCAGTGGAGCCAGATGAAAATGAAACTCAGAAAGGGGCTGACTATGATGGACCAATTAGGGTTTGGGGTAACTTAGTTGCTTTCTTAGAAAAAATAGATACCGAATTTTTCAAGAGCTTGCAGTGCATAGATCCTCATACAGGCGAGTATGCTGCGAGACTCAAGGATGAGCCATTGTTTTTGGTTCTTGCTCAAAATGTCCAGGAATATCTTGAAAGTAGTGGGGATTTCAAAGCATCTTCTAAGGTAGCCTTGAGGAGGGTTGAACTCATTTACTACAAACCACAAGAGGTTTATGATGCCATGAGAAAATTGGCCGATCTGACCGGGGATGGAGAGAATGAAGGGGAGGCGAGCGAGGAGTCAAAAGGGTTTGAGGATACAAGAATTCCTACTGCATTTGTTGTTACTCCCGAGCTTGTGGCTCGGAAACCCACTTTCCCGGAGAACAGCAGGACTCTAATGGATGTTTTAGTTTCACACATATACAAGCATGGTGACGAGCGCACTAAAGCACGGGCAATGCTTTGTGATATATATCACCATGCTCTTCTAAATGAATTCTCAATAGCTCGTGATCTGTTGCTTATGAGTCATTTACAAGAAAATGTTCAGCACATGGACATTTCAACTCAGATACTTTTTAACAGGGCTATGTCACAGTTAGGTCTGTGTGCTTTTCGGGTTGGATTGATTTCTGAAGCCCATGGCTGTCTATCTGAACTTTATTCAGGTGGAAGGGTGAAAGAGTTGCTCGCACAAGGTGTGTCACAAAGTCGTTATCATGAGAAGACTGCAGAACAGGAAAGGTTGGAAAGAAGAAGACAGATGCCATACCATATGCACATAAATCTTGAGCTCCTGGAAGCAGTGCATCTTATATCTGCTATGCTGCTGGAGGTTCCCAATATGGCTGCCAATGTTCATGATGCCAAGCATAGGGTCATTAGTAAGAATTTCCGCCGCTTGCTTGAGGTCAGTGATAAACAAACGTTCACTGGTCCTCCTGAGAGTGTCAGAGATCACATTATGGCTGCCACCAGAGTTCTTATTAAAGGAGACTTCAATAAGGCTTTTGACATTATTACCTCTCTTGATGTATGGAAATTTGTGAAAAATCGAGAAACTGTATTGGAAATGCTGAAGGACAAAATCAAGGAGGAGGCCCTTAGGACATATCTCCTAACCTTCTCTTCATCCTATGAGTCTTTGAGTGTGGATCAAGTCACAAAATTTTTTGACCTCTCTGTTCCTCGCACTCATAGCATTGTGAGTAGGATGATGATCAATGAGGAGCTTCATGCAAGCTGGGACCAGCCAACTGGGTGCATTGTTTTCCAAAATGTTGAGCACTCTAGGCTGCAAGCATTGGCATTCCAGTTGACAGATAAATTATCTATCCTTGCAGAGAGTAATGAGAGAGCCACAGAGGCAAGATTAGGTGGTGGATTGGATCTACCTCCGAGACGGAGGGATGGCCAGGACTATGCTGCTGCGGCTGCTGGCGGTGGTAGTGGAACTGGCTCTATAGGTGGTAGGTGGCAAGACTTGTCCCATTCTCAGCCACGGCAAGGAAGTGGGCGTGCAGGATATGGTAATGCTGGTGGAAGGCCATTGGCATATGGTCAAGCAGCCAGGAGTGGTTATTCAAGGGATCGAACAGGTCGTGGAACAGGTGGTGGTTATCAGAGTTCAGGGAGGGCTACTCAAGGGGGTTCAGGACTGAGGGGATCCCATGGCGATGTATCTACTCGCATGGTTAGCCTTAAGGGAGTTCGTGTTTAA 2811 0.4479 MASRFWTQAGSDSEDEESDYDGEVEEVEGESGPDPTKTNYYLQGNASDSDDSDGQKRVVRSAKDKRYEEMASTVDQMKNATKINDWVSLQESFDKINKQLEKVMRVAETDKVPSLYIKALVMLEDFLAQALANKDAKKKMSSSNAKALNSMKQKLKKNNKQYEELINKCRESPESEEEKVEDEESEEEDESDGEIIEPEQLRKRELKSDSEVEYEDGKDDAGEGGWDQKLSKKDRLLDRQLMKDPREVTWDIVNKKFKEIVAARGRKGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVVSAQFDVNPGLSGHMPITVWKKCVQNMLLILDILVQFPNIKVDDSVEPDENETQKGADYDGPIRVWGNLVAFLEKIDTEFFKSLQCIDPHTGEYAARLKDEPLFLVLAQNVQEYLESSGDFKASSKVALRRVELIYYKPQEVYDAMRKLADLTGDGENEGEASEESKGFEDTRIPTAFVVTPELVARKPTFPENSRTLMDVLVSHIYKHGDERTKARAMLCDIYHHALLNEFSIARDLLLMSHLQENVQHMDISTQILFNRAMSQLGLCAFRVGLISEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTAEQERLERRRQMPYHMHINLELLEAVHLISAMLLEVPNMAANVHDAKHRVISKNFRRLLEVSDKQTFTGPPESVRDHIMAATRVLIKGDFNKAFDIITSLDVWKFVKNRETVLEMLKDKIKEEALRTYLLTFSSSYESLSVDQVTKFFDLSVPRTHSIVSRMMINEELHASWDQPTGCIVFQNVEHSRLQALAFQLTDKLSILAESNERATEARLGGGLDLPPRRRDGQDYAAAAAGGGSGTGSIGGRWQDLSHSQPRQGSGRAGYGNAGGRPLAYGQAARSGYSRDRTGRGTGGGYQSSGRATQGGSGLRGSHGDVSTRMVSLKGVRV 936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01614 936 MobiDBLite consensus disorder prediction 819 925 - -
Vivi1g01614 936 MobiDBLite consensus disorder prediction 196 228 - -
Vivi1g01614 936 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 2 872 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Vivi1g01614 936 MobiDBLite consensus disorder prediction 135 228 - -
Vivi1g01614 936 MobiDBLite consensus disorder prediction 1 71 - -
Vivi1g01614 936 Pfam PCI domain 661 789 IPR000717 -
Vivi1g01614 936 MobiDBLite consensus disorder prediction 50 71 - -
Vivi1g01614 936 MobiDBLite consensus disorder prediction 899 914 - -
Vivi1g01614 936 MobiDBLite consensus disorder prediction 853 869 - -
Vivi1g01614 936 MobiDBLite consensus disorder prediction 12 29 - -
Vivi1g01614 936 MobiDBLite consensus disorder prediction 156 175 - -
Vivi1g01614 936 MobiDBLite consensus disorder prediction 136 155 - -
Vivi1g01614 936 MobiDBLite consensus disorder prediction 176 195 - -
Vivi1g01614 936 ProSiteProfiles PCI domain profile. 621 793 IPR000717 -
Vivi1g01614 936 SUPERFAMILY "Winged helix" DNA-binding domain 720 792 IPR036390 -
Vivi1g01614 936 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 45 653 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Vivi1g01614 936 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 722 810 IPR000717 -
Vivi1g01614 936 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 931 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Vivi1g01614 936 Coils Coil 145 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01614 Vivi-Chr1 34177035 34182438 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01614 1 936 Eukaryotic Initiation Factors Gene Family AT3G56150 66.842 0.0 1178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01614 K03252 - gmx:100781967 1437.55