Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01603 ATGTTTCTACAGTTCTTCATGATATTGACAATAATAGAAGCCACATACACAACAACTGAAAAAAATGTCTCCAGCAGTATCATTCGGTTAGGGTCTTCACTCTCTCCAAAAGGCAAAAATAGTTCATGGCCATCAAGTTCTGGCCATTTTGCTTTCGGATTTTATCCACAAAGTAGTGGCTTTGCTGTTGGGATATGGCTAGTTAGTCCATCTGAAAACAAAACTGTTGTGTGGACCGCTAACCGTGATGCGCCAAAAGTCTCCTCCAAATCTATGTTGAATTTGACAGAGCAAGGCCTGCTAATTCAAAATGGAAGGGGAGATTCACCTAACAATATAGACACAAGAGATTCAAATACGGGGTTAGTCTCATGGGCATCTATGCTCGATTCTGGAAACTTTGTGCTCTATGATGATGATTTTAATGTTATATGGCAAAGCTTTGATCACCCAACTGACACAATATTAGGAGGTCAGAATTTGACTAGTGGTGGTGATGAATATGATTTAGTCTCAAGTATTTCCAAATCAGACCATTCAAGTGGATGTTTCTATCTCACCATACAAGCTGATGGAAACATCGTCGCTTACCCCTTGTACAGCGGATCCAGCGAGCTCGATGCTTACTGGGCTTCAAATACTCAGAATCAAATGTACCAATACCAAAAACTCGGTCTTAGCAATCAAGGCTTTCTTTGCCTAAATGAAGGTAGTGGTAGTAGTAATAGGCTATGTTTCAATGATAGCAATAAGCCTAGAAAGAAGTCATCACACAACAACACAACTTCAATCTACCGTGCAACACTAGATGTAGATGGAAATTTGAGATTGTATGAGCACCAATTTCACTTTGAGGGCAACAATAGCTCTGGAGTGGTAATGTTGTGGCAAGCACTAAACGATACATGTACAGTGAAGGGGCTTTGCGGGTTGAACAGTTATTGTACCTCCGACTTAAGAGGTGATGTTGTCTGCAAATGTTATCCTGGTTTCATCCCTTCCAATACTAAAAGTGTGCCTATGGACTGCATACAGACGCATAGCAAAGACGATTGTGAAAGCAGTAAAGACCGAACGCTGTTGTATAATTTTACTCGCTTTGAGAATATGCTTTGGGGTGATGTTCCATATTCTGTTATACCCATGATGAAGATGGAAACTTGTGAGAAGACTTGTGCACAAGATTGTGGTTGCGGGGGAGCAATATATACCAAAGGCAACTGCAATATATATAGGCTTCCACTTATATGGGGAAGGACTCAAAATGATTCTTCTTCCACTGTGCCTGTGGCCTTAGTAAAGACTCCAAAAATTTCCAATACTATTTCACCTCCAACCTCAAACCACACCAACGAATCTAAGCCTAAGGTTATTATTGACAACAAGAAAAACCTGATAATGATCTTAGCGCTTACTTTGGGCGTCGTTTCATTGATTTGTTTGGTCATGGCGGTGTCCATTTTCTTCACTTACAGGCGTCAAGTTATAAGGTATGCAATGTTGTCTGAAAGCGAAAAACTTGAATTTACTGAAGAATGTTCCTTGCGTTCGTTTTCTTTTGACGAACTCGTAAAATCAACGGGGCAATTTTCAGAAGAGATAGGGAGAGGATCATTTGGAACTGTTTATAAAGGTAAAATAGACGAGAATAACAGAAGTATTGCAGTGAAGAGACTGGATGAGAGAATTGCTGAGGAAGGGGAGAGGGAATTCCAAGCTGAAATTACGGCCATTGCTCGAACTCATCACAGGAATTTAGTAAAGCTTATTGGTTTCTGCATAGAAGGGTCCAAGAAGCTACTTGTTTATGAATTTGTCAGCAAAGGTTCTCTTGCAAATCTCCTCTTTGAACAGGAAACAAGAATAACTTGGAAAGAGAGAATGAAACTTGCATTGGACGTGGCTAGAGGACTACTGTATCTACATGAAGAGTGTGAAGTCCGAATCATCCATTGCAATATAAATCCTCGAAATATTCTTATGGATGAAGCATGGACTGCAAAAATATCTGATTTTGGATTGGCAAGACTATCAAAGAGGGGACATTCAAGAACTAAAATAGGGGATGATGGCGCAAGCAGGTACTTGGCCCCTGAGTGGCAGAAGGAGGATGCATCAGTATCAGTAAAATCTGACATTTACAGTTTTGGGGTGATATTGTTGGAGATTATCTGTCTGAGAAGAAGTAAAGAGATGAATAATATTTCCTCATCTGATGAAATCCTTCTATCCAGCTGGGTATATCAATGTTTTGCAGCCGGACAATTAAACAAACTTATCAGACATGGTGAAAAAGATGTGGACTGGAAGATATTGGAAACAATGGTGAAGGTGGGGTTGTGGTGTGTGCAAAACCACCAATCTCTCCGCCCTACAATGAAGAATGTAATATTGATGTTGGAAGCTTTGAAAGAGATTCCAGTTCCTCCATCTCCAACTCGTTTGGTTGAATAG 2454 0.4018 MFLQFFMILTIIEATYTTTEKNVSSSIIRLGSSLSPKGKNSSWPSSSGHFAFGFYPQSSGFAVGIWLVSPSENKTVVWTANRDAPKVSSKSMLNLTEQGLLIQNGRGDSPNNIDTRDSNTGLVSWASMLDSGNFVLYDDDFNVIWQSFDHPTDTILGGQNLTSGGDEYDLVSSISKSDHSSGCFYLTIQADGNIVAYPLYSGSSELDAYWASNTQNQMYQYQKLGLSNQGFLCLNEGSGSSNRLCFNDSNKPRKKSSHNNTTSIYRATLDVDGNLRLYEHQFHFEGNNSSGVVMLWQALNDTCTVKGLCGLNSYCTSDLRGDVVCKCYPGFIPSNTKSVPMDCIQTHSKDDCESSKDRTLLYNFTRFENMLWGDVPYSVIPMMKMETCEKTCAQDCGCGGAIYTKGNCNIYRLPLIWGRTQNDSSSTVPVALVKTPKISNTISPPTSNHTNESKPKVIIDNKKNLIMILALTLGVVSLICLVMAVSIFFTYRRQVIRYAMLSESEKLEFTEECSLRSFSFDELVKSTGQFSEEIGRGSFGTVYKGKIDENNRSIAVKRLDERIAEEGEREFQAEITAIARTHHRNLVKLIGFCIEGSKKLLVYEFVSKGSLANLLFEQETRITWKERMKLALDVARGLLYLHEECEVRIIHCNINPRNILMDEAWTAKISDFGLARLSKRGHSRTKIGDDGASRYLAPEWQKEDASVSVKSDIYSFGVILLEIICLRRSKEMNNISSSDEILLSSWVYQCFAAGQLNKLIRHGEKDVDWKILETMVKVGLWCVQNHQSLRPTMKNVILMLEALKEIPVPPSPTRLVE 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01603 817 CDD B_lectin 45 151 IPR001480 -
Vivi1g01603 817 ProSiteProfiles Bulb-type lectin domain profile. 25 149 IPR001480 -
Vivi1g01603 817 ProSiteProfiles PAN/Apple domain profile. 352 432 IPR003609 -
Vivi1g01603 817 Gene3D Transferase(Phosphotransferase) domain 1 606 806 - -
Vivi1g01603 817 Pfam D-mannose binding lectin 75 162 IPR001480 -
Vivi1g01603 817 Gene3D - 152 300 IPR036426 -
Vivi1g01603 817 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 34 811 - -
Vivi1g01603 817 FunFam Putative receptor-like protein kinase 606 808 - -
Vivi1g01603 817 Pfam S-locus glycoprotein domain 243 334 IPR000858 GO:0048544
Vivi1g01603 817 Pfam Protein tyrosine and serine/threonine kinase 530 797 IPR001245 GO:0004672|GO:0006468
Vivi1g01603 817 PIRSF SRK 1 817 IPR024171 GO:0004674
Vivi1g01603 817 ProSiteProfiles Bulb-type lectin domain profile. 159 290 IPR001480 -
Vivi1g01603 817 Gene3D Phosphorylase Kinase; domain 1 492 605 - -
Vivi1g01603 817 SUPERFAMILY Protein kinase-like (PK-like) 511 801 IPR011009 -
Vivi1g01603 817 ProSiteProfiles Protein kinase domain profile. 528 803 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g01603 817 SUPERFAMILY alpha-D-mannose-specific plant lectins 75 216 IPR036426 -
Vivi1g01603 817 SMART blect_4 25 151 IPR001480 -
Vivi1g01603 817 FunFam S-receptor-like serine/threonine-protein kinase 498 605 - -
Vivi1g01603 817 ProSitePatterns Protein kinases ATP-binding region signature. 534 557 IPR017441 GO:0005524
Vivi1g01603 817 SUPERFAMILY alpha-D-mannose-specific plant lectins 181 280 IPR036426 -
Vivi1g01603 817 Gene3D - 22 149 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01603 Vivi-Chr1 33981954 33985041 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01603 441 812 Receptor kinase-like Gene Family AT4G18250 38.281 1.37e-63 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vivi1g01603 PK_Tyr_Ser-Thr 1.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01603 - - cam:101496142 1223.76