Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01600 ATGAATGCCTATGGCTATACTATTGCAACTATCACTTTGGTTCTATTCATATCCTGGTTATTACCAAGTATTGGAGTTGAAACAGAGGCACCACAATCAGAGCTGATACCTCCCGGTTCCTCACTTTCCATTAGCAGTGCTCACCCCTCTTCATGGCGTTCCCATTCCGGCCTATTTTCCTTTGGCTTTTATCGACAAGGAAATGGCTTTGTCGTCGGAATTTGGTTTGGCAAGAATAACAGGACAATAGTATGGACTGCAAACAGGGATTATCCTCCGGTGACCTCAACTGCAAATCTACAATTTACCATGGACGGTACACTAATACTAAAGGATCAACATGGACAAGAGAAGGTTATGGTTAATGCCAATGCAAGAGCTTCCTTTGCCTCGATGCTTGATTCTGGCAACTTTGTACTATACGACAGCAATAATATTTCCAAAATCATATGGCAGAGTTTCGACTTTCCAACTGATACTTTGTTGGAGGGTCAATCTCTACCTCTTGGAGGCCAACTGTTCTCTAGTTCATCAAACCACAATAGCTCAACTGGAAAGTTTTATCTCCATATGCGGACTGATGGAGATCTTACTCTCTATCCAGCATACACATTAGAATCAGCTTGGGAAGCTTATTGGGCCTCTGGTACCGCTGGAGATGGTAGGCCAACTATTCAATATTATCTTTACCTCAACAAAACCGGTTTACTGCAGATCTGGAATAGAAGCAGTAATTCTAACCTTATTGCCACTTTGAAAAGTGATGAAGGGGACCAGCACAACACTGGAAACCAGACTATTTATCGTGCAACCCTTGATTCTGATGGGGTTTTTCGGCTGTATGCTTATCATGTTAACAATGAAAGCAATAATATTATAGGAAGTTGGCCAGGGAAGAATACATGTGATGTAAAAGGGTTTTGTGGCTACAACAGTTACTGCACATTCAATGATGACAAACCAGTGTGCAATTGTCTCCCGGGTTATAAATTTGTAGATGCAAATGATGATACTCTTGGCTGTGAAAGGAACTATTCAAAAGAAGAATGTAAAGGGGACAGAGATGCTAAGGCCTTTTATGAAATGGTCCCGATGAACAATATTGTATGGGAGGACTGTCCTTATTTCAAAGATGAACGGATGTCGTTTGAACAAGAATGTTCATTTGCTTGCTTGGTTGATTGCAACTGTTGGGCTGCAGTTTACAAAAAAGAAGACGGCCATTGCAAGAAACAAGGTCTGCCTTTGAGATATGCCAAACGATCACATGAAGCTGACGATTCTACCACGGCTTTCTTAAAGGTTGGAAAGAATAGCATCCAAAGTTCAAAGTCGTATGGAAAACCTATTTCTTTTCCAATCAAGACTACAAGTAACAAATCAGTAGTGCACATTATTGTCATTACATCCATATTTAGTGTTGTTTTGTGTTCAGTGATTGTAATATCCATCCATTACATATACAAGATTCGGGTACTGAAGTACAAAAGACTAACAGAGACTTGGAACTTTGGAGGGCTGAATGAAGAGGTGTCTTTGAGAAGGTTTACATACAATGAGCTAAGAAGGGCAACAAATCATTTCAAGGAAAAGTTGGGTAAGGGCTCTTTTGGAGCAGTTTACAAAGGAGCCTTAAACAAAGGTAAGAGATTGATTGCAGTGAAGAGACTAGAGAAGTTGGTGGAAGAAGGAGAAAGAGAGTTTCAAGCAGAAGTGAGAGCCATTGGAAAAACCCACCACAGGAACCTAGTTAGATTGCTTGGTTTTTGTGCTGAGGGTTCTAAAAGGCTTCTAGTTTATGAATACATGATCAATGGTTCACTTGGAAAGCTTCTGTTTGGTGATCAAAGACGTCCCGACTGGGATGAGAGAGTAAAAATAGCACTAGATATTGCTAGAGGGATATTGTATCTCCATGAAGAGTGTGAGGCACCAATCATTCATTGTGACATAAAGCCTCAAAACATTTTGATGGATGAGTTTTGGACTGCTAAGATATCTGATTTTGGTCTTGCAAAACTTCTAATGCCAGACCAAACCAAAACTTTCACGGTGATTAGAGGGACAAGAGGCTATATGGCTCCGGAATGGAACAAGAACGTGCCAATATCACCGAAGACAGATGTTTATAGCTATGGAATAATGCTGCTGGAAATTTTGTGTTGCAGAAGAAACATAGATGTTGATCATGTGTTGGAACCTGAGGAGATTCTTCTCTCTGGTTGGGCTTATAAGAGCTTTGTTGCAGGAGAGGTGAATAAGCTTGTTCCTTGCGAAGTCATCGATAACGATGTCTTAGAAAATATGATTAAGGTGGCTCTTTGGTGTATCCAAGATGACCCTCTTCTCAGGCCAACAATGAAGGGTGTGGTGTTGATGTTGGAAGGAGTTACTAATATAGCAATTCCTCCTTGTCCAAATTCCAATCATGCATAG 2436 0.406 MNAYGYTIATITLVLFISWLLPSIGVETEAPQSELIPPGSSLSISSAHPSSWRSHSGLFSFGFYRQGNGFVVGIWFGKNNRTIVWTANRDYPPVTSTANLQFTMDGTLILKDQHGQEKVMVNANARASFASMLDSGNFVLYDSNNISKIIWQSFDFPTDTLLEGQSLPLGGQLFSSSSNHNSSTGKFYLHMRTDGDLTLYPAYTLESAWEAYWASGTAGDGRPTIQYYLYLNKTGLLQIWNRSSNSNLIATLKSDEGDQHNTGNQTIYRATLDSDGVFRLYAYHVNNESNNIIGSWPGKNTCDVKGFCGYNSYCTFNDDKPVCNCLPGYKFVDANDDTLGCERNYSKEECKGDRDAKAFYEMVPMNNIVWEDCPYFKDERMSFEQECSFACLVDCNCWAAVYKKEDGHCKKQGLPLRYAKRSHEADDSTTAFLKVGKNSIQSSKSYGKPISFPIKTTSNKSVVHIIVITSIFSVVLCSVIVISIHYIYKIRVLKYKRLTETWNFGGLNEEVSLRRFTYNELRRATNHFKEKLGKGSFGAVYKGALNKGKRLIAVKRLEKLVEEGEREFQAEVRAIGKTHHRNLVRLLGFCAEGSKRLLVYEYMINGSLGKLLFGDQRRPDWDERVKIALDIARGILYLHEECEAPIIHCDIKPQNILMDEFWTAKISDFGLAKLLMPDQTKTFTVIRGTRGYMAPEWNKNVPISPKTDVYSYGIMLLEILCCRRNIDVDHVLEPEEILLSGWAYKSFVAGEVNKLVPCEVIDNDVLENMIKVALWCIQDDPLLRPTMKGVVLMLEGVTNIAIPPCPNSNHA 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01600 811 ProSiteProfiles Bulb-type lectin domain profile. 33 153 IPR001480 -
Vivi1g01600 811 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 47 807 - -
Vivi1g01600 811 CDD STKc_IRAK 532 796 - -
Vivi1g01600 811 Pfam D-mannose binding lectin 82 167 IPR001480 -
Vivi1g01600 811 ProSitePatterns Protein kinases ATP-binding region signature. 532 555 IPR017441 GO:0005524
Vivi1g01600 811 Gene3D Phosphorylase Kinase; domain 1 493 602 - -
Vivi1g01600 811 Gene3D - 156 293 IPR036426 -
Vivi1g01600 811 Gene3D Transferase(Phosphotransferase) domain 1 603 802 - -
Vivi1g01600 811 FunFam Serine/threonine-protein kinase 157 292 - -
Vivi1g01600 811 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 603 802 - -
Vivi1g01600 811 FunFam S-receptor-like serine/threonine-protein kinase 498 602 - -
Vivi1g01600 811 SUPERFAMILY Protein kinase-like (PK-like) 510 795 IPR011009 -
Vivi1g01600 811 ProSiteProfiles Protein kinase domain profile. 526 811 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g01600 811 SUPERFAMILY alpha-D-mannose-specific plant lectins 180 281 IPR036426 -
Vivi1g01600 811 Pfam Protein kinase domain 528 790 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g01600 811 PIRSF SRK 6 811 IPR024171 GO:0004674
Vivi1g01600 811 ProSitePatterns Serine/Threonine protein kinases active-site signature. 646 658 IPR008271 GO:0004672|GO:0006468
Vivi1g01600 811 SMART serkin_6 526 794 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g01600 811 Pfam S-locus glycoprotein domain 261 330 IPR000858 GO:0048544
Vivi1g01600 811 SMART blect_4 41 157 IPR001480 -
Vivi1g01600 811 Gene3D - 31 155 IPR036426 -
Vivi1g01600 811 CDD B_lectin 54 157 IPR001480 -
Vivi1g01600 811 SUPERFAMILY alpha-D-mannose-specific plant lectins 72 217 IPR036426 -
Vivi1g01600 811 Coils Coil 554 574 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01600 Vivi-Chr1 33842846 33845539 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01600 513 796 Receptor kinase-like Gene Family AT1G60800 44.710 7.08e-68 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vivi1g01600 Pkinase 7.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01600 - - gmx:100815958 926.391