Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01597 ATGGTTCAATCGAAAAAGTTCAGAGGTGTCAGGCAGCGTCATTGGGGTTCTTGGGTTTCTGAAATTCGTCATCCTCTTTTGAAGAGAAGGGTGTGGCTAGGAACATTTGAAACAGCTGAGGAAGCGGCGAGAGCATATGATCAAGCAGCGATTTTAATGAGTGGTCGGAATGCGAAAACGAATTTTCCGATAACGCAAACTCCGGAAGGTGATCCAAAGAGCAGTGTAAGTACTGATGATAAGAACAAACATTCGAGTTCTTCAAAGGATCTAGAAGAAATCTTACACGCTAAGCTTCGGAAATGTGGGAAGTTACCATCGCCTTCCATGACTTGTTTGAGGTTGGATACCGAAAACTCTCACATTGGTGTGTGGCAAAAACGTGCTGGGAAATGTTCTGATTCGAATTGGGTTATGACTGTTCAACTTGGTAAGAAGAGTGTGACTGAAGATAATGGTAGCACTAGCACTAGCACTAGCACTAGTACTAGTAGTAGTAGTGTTGTGCCTTCGACTTCGTCGATGGTTGCGACCGGAGAGGAAATCGTGCGAGGAGAGATTGATGAAGAGGATAGAATTGCACTTCAAATGATAGAGGAACTTCTGAATGATAAGAATTGTCCTAGCTCATCAGTTAACAATGCTAAACAAGGGGATGATATTGATAACAGCTTTTTTCTTTGA 684 0.4254 MVQSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPITQTPEGDPKSSVSTDDKNKHSSSSKDLEEILHAKLRKCGKLPSPSMTCLRLDTENSHIGVWQKRAGKCSDSNWVMTVQLGKKSVTEDNGSTSTSTSTSTSSSSVVPSTSSMVATGEEIVRGEIDEEDRIALQMIEELLNDKNCPSSSVNNAKQGDDIDNSFFL 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01597 227 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Vivi1g01597 227 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Vivi1g01597 227 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 3 159 - -
Vivi1g01597 227 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Vivi1g01597 227 MobiDBLite consensus disorder prediction 74 90 - -
Vivi1g01597 227 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Vivi1g01597 227 MobiDBLite consensus disorder prediction 60 90 - -
Vivi1g01597 227 MobiDBLite consensus disorder prediction 146 180 - -
Vivi1g01597 227 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Vivi1g01597 227 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Vivi1g01597 227 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Vivi1g01597 227 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Vivi1g01597 227 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Vivi1g01597 227 MobiDBLite consensus disorder prediction 146 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01597 Vivi-Chr1 33772138 33773524 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01597 1 203 AP2-EREBP Transcription Factor Family AT1G15360 61.650 6.62e-79 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi1g01597 AP2 9.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01597 - - gsj:114375848 320.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g01597 1 33772138 33773524 Vivi3g01333 3 21739918 21741273 ECH
Vivi1g01597 1 33772138 33773524 Vivi1g01597 1 33772138 33773524 ECH