Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01579 ATGTCAAGCTGCAGTATCGATGTTGCACCTGCAGAACAACTCTGCTACATCCCTTGCAACTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAGTAGCTTGTTTGACATAGTGACCGTTAGATGTGGTCACTGCACAAATCTATGGTCTGTGAACATGGCTGCAGCGTTTCAGTCACTTTCATGGCAAGATATTCAGGCACCTAGCCACTGCATGAATCCAGAGTATAGGATTCGAACCAGTGGCAACACTTCCAAATGCAACGATAGGATTGCAATGAGAACTGCACCAACCACTCATGTTACTCAAGAAAGAGTTGTTAACCGCCCTCCCGAGAAGAGGCAGCGTGTACCTTCTGCTTATAATCAGTTCATAAAGGAAGAGATTCAGAGGATAAAGGCTAATAATCCTGATATTAGTCACAGAGAAGCTTTCAGTACAGCTGCAAAGAACTGGGCACATTTTCCTCATATTCATTTTGGGCTAATGTTGGAGAGCAACAATCAAGCTAAGATGGAGAATGTGTCTGAGAAGCGTTTGATGTCAAGGGCTGCACTAATGAACAAATGA 573 0.4363 MSSCSIDVAPAEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDIQAPSHCMNPEYRIRTSGNTSKCNDRIAMRTAPTTHVTQERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLESNNQAKMENVSEKRLMSRAALMNK 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01579 190 CDD HMG-box_SF 117 153 - -
Vivi1g01579 190 Gene3D High mobility group box domain 101 181 IPR036910 -
Vivi1g01579 190 Pfam YABBY protein 10 163 IPR006780 GO:0007275
Vivi1g01579 190 PANTHER PROTEIN YABBY 6-RELATED 1 173 IPR006780 GO:0007275
Vivi1g01579 190 FunFam Axial regulator YABBY 108 180 - -
Vivi1g01579 190 SUPERFAMILY HMG-box 106 156 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01579 Vivi-Chr1 33349527 33352809 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01579 7 173 C2C2-YABBY Transcription Factor Family AT2G26580 74.850 1.32e-88 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Vivi1g01579 YABBY 4.1e-70 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01579 K25796 - gmx:100804731 351.288