Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01559 ATGGATCTTCATTTGACTCTCTCTCTCTCCAATGCTTCTAGCAAGACTCATTTCCCAAACAAGAAACGTAGTTTTCCCCAATTCAATGAACTCGTAGAACAAACGTCTAGTAACACCAACGGATCAGATGTTATGAATCCCACTCTTTCTCTCCTCCCATTAACTCCTCATGGCCACTCAGATCATCATGAACATGAACCCTCCTGTCAGAGTTCCACTTCCACTATCACCAAGAGAGGTGAAGATGATGGAGAAGCTCTCCTGGGCTGGCCTCCGGTTAGTTATAGGAAAAAGAAACATAGTTACAATGAGGATCAAGAGGTGTCAAGCAATTACGTGAAAGTGAAGATGGAGGGTGTAGGAATAGCTAGAAAAGTTAATCTCACCCCACACCATTCATTTCAAACTCTCAACCAAACTTTGATGCATATGTTTGGAAAATGTGATGATGATCAACAACAGTATGAACTGGTTTATCAAGACAAAGAAGGTGACTGGATTCTTGCTCAAGATGTTCCATGGAGAAGTTTCATGGAGTGTGCCCAACGCCTCAAATTGCTCCAGAGGAGGGGATAA 576 0.4253 MDLHLTLSLSNASSKTHFPNKKRSFPQFNELVEQTSSNTNGSDVMNPTLSLLPLTPHGHSDHHEHEPSCQSSTSTITKRGEDDGEALLGWPPVSYRKKKHSYNEDQEVSSNYVKVKMEGVGIARKVNLTPHHSFQTLNQTLMHMFGKCDDDQQQYELVYQDKEGDWILAQDVPWRSFMECAQRLKLLQRRG 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01559 191 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 4 188 IPR003311 GO:0005634|GO:0006355
Vivi1g01559 191 MobiDBLite consensus disorder prediction 53 90 - -
Vivi1g01559 191 ProSiteProfiles PB1 domain profile. 110 191 IPR000270 GO:0005515
Vivi1g01559 191 MobiDBLite consensus disorder prediction 1 22 - -
Vivi1g01559 191 SUPERFAMILY CAD & PB1 domains 103 185 - -
Vivi1g01559 191 Gene3D - 106 191 - -
Vivi1g01559 191 Pfam AUX/IAA family 50 147 IPR033389 -
Vivi1g01559 191 Pfam AUX/IAA family 152 188 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01559 Vivi-Chr1 32889423 32890882 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01559 66 187 B3 DNA Binding Superfamily AT1G19220 29.365 4.68e-10 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vivi1g01559 AUX_IAA 2.8e-13 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01559 K14484 - gmx:100804096 162.54