Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01557 ATGTATACATACACTATGGACCTTCATTTGACTCTCGCTCTCTCCAATTCTCTTGCTTACAATGCTTCTACCAAGACTCGTTTCCCTAATACTAAGAAACGTAGTTTTTCCCAACTCTTGCAACATGCAGAAGAAATGTCTAGTAACATCAACGGATCAGATGTTGTGTTTCCCACTTTGTCTCTCCTCCCGTTAACTCCTGGCCACTCAGATCATCATGATCATGATCATGAACACTCCTGTAACAGTTCCACTTCCACTATCACCAAGAGAGGTGAAGATGATGAAGAAGCTCTCGTGGGTTGGCCTCCGGTTTATCATAGAAGGAAGAAACATCGTTATAATGAGGATCACGTGGTGTCAAGAAATTACGTGAAGGTGAAGATGGAGGGTGAAGGAATAGCTAGAAAAGTTAATCTCAGCATGCACCATTCATTTCACACTCTCAACCACACTTTGTTGGACATGTTTGGAAAATTATTAACAGGTGATGATGATCAAAAGTATGAACTGGTTTATCAAGACAAAGAAGGTGACTGGCTTCTTGCTCAAGATGTTTCATGGAGAAGTTTTATGGAGTGTGCCCAACGCCTCAAATTGCTCAAGAGGAGAGGATAA 618 0.4142 MYTYTMDLHLTLALSNSLAYNASTKTRFPNTKKRSFSQLLQHAEEMSSNINGSDVVFPTLSLLPLTPGHSDHHDHDHEHSCNSSTSTITKRGEDDEEALVGWPPVYHRRKKHRYNEDHVVSRNYVKVKMEGEGIARKVNLSMHHSFHTLNHTLLDMFGKLLTGDDDQKYELVYQDKEGDWLLAQDVSWRSFMECAQRLKLLKRRG 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01557 205 Gene3D - 118 205 - -
Vivi1g01557 205 ProSiteProfiles PB1 domain profile. 122 205 IPR000270 GO:0005515
Vivi1g01557 205 Pfam AUX/IAA family 29 164 IPR033389 -
Vivi1g01557 205 Pfam AUX/IAA family 166 203 IPR033389 -
Vivi1g01557 205 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 8 203 IPR003311 GO:0005634|GO:0006355
Vivi1g01557 205 MobiDBLite consensus disorder prediction 68 94 - -
Vivi1g01557 205 SUPERFAMILY CAD & PB1 domains 121 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01557 Vivi-Chr1 32823869 32825217 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01557 121 198 B3 DNA Binding Superfamily AT3G61830 37.037 1.41e-09 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vivi1g01557 AUX_IAA 8.3e-23 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01557 K14484 - gmx:100804096 172.94