Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01555 ATGGAGCTTCATTTGAGTCTCGCTCTCTCCAACTCTCATGCCTACGATGCTTCTACCAAGACTCATTTCCCTAATAAGAAACGTAGTTTCTCCCAACTTTTGGAACATGCAGCAGAAACGTCTAGTAACACCAACAGATCAGATGTTATGTTTCATACTCTTTGTCTTCTCCCATTAACTCCTGGCCACTCAGATCATCATGATCATGAACACTCCTGTCACAGTTCCACTTCCACCATAACCAAGAGAGGTGAAGATGATGAAGAAGCTCTCGTTGGTTGGCCTCCAGTTTATTATAGGAGAAAGAAACTTCGTTATAATGAGGATCACGTGGTGTCAAGAAATTACGTGAAGGTGAAGATGGAGGGTGTAGGAATAGGTCGAAAAGTTAATCTTAGCACGCACCATTCATTTCACACTCTCAACCAAACTCTGATGCATATGTTTGGAAAATGTGATGATCAACAACAGTATGAACTGGTTTATCAAGACAAAGAAGGTGACTGGATTCTTGCTCAAGATGTTTCATGGAGAAGTTTCATTGAGTGTGCCCAACGTCTCAAATTGCTCAAGATCAGAGGATAA 585 0.4137 MELHLSLALSNSHAYDASTKTHFPNKKRSFSQLLEHAAETSSNTNRSDVMFHTLCLLPLTPGHSDHHDHEHSCHSSTSTITKRGEDDEEALVGWPPVYYRRKKLRYNEDHVVSRNYVKVKMEGVGIGRKVNLSTHHSFHTLNQTLMHMFGKCDDQQQYELVYQDKEGDWILAQDVSWRSFIECAQRLKLLKIRG 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01555 194 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 3 191 IPR003311 GO:0005634|GO:0006355
Vivi1g01555 194 Pfam AUX/IAA family 155 191 IPR033389 -
Vivi1g01555 194 Pfam AUX/IAA family 16 151 IPR033389 -
Vivi1g01555 194 SUPERFAMILY CAD & PB1 domains 113 191 - -
Vivi1g01555 194 Gene3D - 110 193 - -
Vivi1g01555 194 ProSiteProfiles PB1 domain profile. 114 194 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01555 Vivi-Chr1 32721173 32722377 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01555 113 187 B3 DNA Binding Superfamily AT2G46530 33.333 5.23e-10 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vivi1g01555 AUX_IAA 2e-14 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01555 K14484 - gmx:100804096 172.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g01555 1 32721173 32722377 Vivi1g01555 1 32721173 32722377 ECH