Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01554 ATGGAGGGTGTAGGAATAGCTAGAAAAATTAATCTTAGCACACATCATTCATTTCAAACTCTCAACCAAACTTTGTTGGACATGTTTGGAAAAAGTGATGATGATCAGAAGTATGAACTGGTTTATCAAGACCAAGAAGGTGATTGGATTCTTGCTCAAGATGTTTCATGGAGATATTTCATTGAGTGTGCCCAACGCCTTAAATTGCTCAAGATAAGAGGATAA 225 0.3644 MEGVGIARKINLSTHHSFQTLNQTLLDMFGKSDDDQKYELVYQDQEGDWILAQDVSWRYFIECAQRLKLLKIRG 74
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01554 74 Pfam AUX/IAA family 35 71 IPR033389 -
Vivi1g01554 74 ProSiteProfiles PB1 domain profile. 1 74 IPR000270 GO:0005515
Vivi1g01554 74 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 1 71 IPR003311 GO:0005634|GO:0006355
Vivi1g01554 74 SUPERFAMILY CAD & PB1 domains 8 71 - -
Vivi1g01554 74 Gene3D - 1 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01554 Vivi-Chr1 32685560 32686327 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01554 6 70 B3 DNA Binding Superfamily AT5G20730 32.857 1.05e-07 45.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vivi1g01554 AUX_IAA 4.2e-10 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01554 K14484 - psat:127135229 149.828