Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01551 ATGGAGATGGAGAACAACAAGTGTGGCTGTTGGTCTGTCCTTAAACGTGGTGTTTGTAAACCTTCTGCTTCTAGACAGTCTCCTAACACTATACCTCGTACTAGTCTTGTCCATGATGCAGCAACCGAGACGCGATATCTAAATGCTAGTAATCGAGAACTCTGTGCTCCGAATGAAGTTAGGCTGTCTTCTGATAATCCTGATCCCCCACCTCAGGAAAACAAGGCTCCTTGTCAGCTTCTTCAGTTCACATTTCACGAGCTGAAGTCTGCGACCGGGAATTTCAGACCTGACAGCATTCTTGGGGAGGGGGGTTTTGGTTATGTTTTCAAAGGATGGATTGAGGAAGGTGGAACTGCCCCGGCGAAACCTGGTTCGGGGGTTACAGTAGCTGTTAAAAGCTTGAAGCCAGATGGACTTCAGGGTCATAGAGAATGGGTGGCTGAAGTTGATTTTCTTGGACAGCTTCACCATCCTAACCTTGTGAAACTTATTGGTTACTGCATCGAAGATGATCAGCGGCTTCTTGTTTACGAGTTTATGACCCGTGGAAGTCTCGAAAATCATCTATTTAGAAGAACCGTGCCGCTTCCATGGTCGAATAGGGTGAAGATTGCACTTGGTGCTGCTAAAGGACTAGCTTTCCTACATAATGGTCCAGAACCAGTCATTTACAGAGATTTCAAAACATCGAATATTTTACTCGATACAGAGTATAATGCGAAGCTTTCAGATTTCGGGCTAGCGAAAGCAGGTCCTCAAGGAGACAAGACACATGTTTCCACCAGAGTTGTTGGAACTTATGGCTATGCAGCTCCTGAATATGTCATGACAGGACACTTGACAGCTAAAAGCGATGTTTATAGCTTTGGAGTTGTGTTACTCGAGATTTTAACAGGACGGAGATCAATGGACAAGAAACGTCCGAGCGGGGAACAAAATCTTGTTTCATGGGCAAGACCATATTTAGCAGACAAGCGAAAACTTTACCAACTCGTTGATCCACGCTTGGAACTAAACTATTCCTTAAAAGCAGTGCAGAAAATTTCTCAGTTAGCTTATGGTTGTCTCAGTAGAGATCCTAAGTGTCGTCCTAACATGGACGAAGTTGTGAATGCTCTGACGCCACTGCAGGATCTTAACGACTTTGCAATCTTGTCGTATCACTCTCGTTTATCTCAACAAGGGAGAAGAAAGAAGAAACCAGACGGAACTTCGCATATCAGTTATACGCATTCCAAGAGCATGAGGGCTTCGCCTTTGAATACCGGAAGACACCTTCGATGA 1287 0.4468 MEMENNKCGCWSVLKRGVCKPSASRQSPNTIPRTSLVHDAATETRYLNASNRELCAPNEVRLSSDNPDPPPQENKAPCQLLQFTFHELKSATGNFRPDSILGEGGFGYVFKGWIEEGGTAPAKPGSGVTVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLFRRTVPLPWSNRVKIALGAAKGLAFLHNGPEPVIYRDFKTSNILLDTEYNAKLSDFGLAKAGPQGDKTHVSTRVVGTYGYAAPEYVMTGHLTAKSDVYSFGVVLLEILTGRRSMDKKRPSGEQNLVSWARPYLADKRKLYQLVDPRLELNYSLKAVQKISQLAYGCLSRDPKCRPNMDEVVNALTPLQDLNDFAILSYHSRLSQQGRRKKKPDGTSHISYTHSKSMRASPLNTGRHLR 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01551 428 CDD STKc_IRAK 101 377 - -
Vivi1g01551 428 Gene3D Phosphorylase Kinase; domain 1 71 180 - -
Vivi1g01551 428 Pfam Protein tyrosine and serine/threonine kinase 99 374 IPR001245 GO:0004672|GO:0006468
Vivi1g01551 428 Gene3D Transferase(Phosphotransferase) domain 1 181 391 - -
Vivi1g01551 428 PANTHER OS01G0588500 PROTEIN-RELATED 76 378 - -
Vivi1g01551 428 FunFam Probable serine/threonine-protein kinase PBL8 181 409 - -
Vivi1g01551 428 ProSitePatterns Protein kinases ATP-binding region signature. 101 133 IPR017441 GO:0005524
Vivi1g01551 428 FunFam Serine/threonine-protein kinase BIK1 63 180 - -
Vivi1g01551 428 ProSitePatterns Serine/Threonine protein kinases active-site signature. 223 235 IPR008271 GO:0004672|GO:0006468
Vivi1g01551 428 SUPERFAMILY Protein kinase-like (PK-like) 77 382 IPR011009 -
Vivi1g01551 428 MobiDBLite consensus disorder prediction 392 428 - -
Vivi1g01551 428 ProSiteProfiles Protein kinase domain profile. 95 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01551 Vivi-Chr1 32479269 32482067 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01551 83 389 Glycoside Hydrolase AT3G07070 54.662 3.32e-111 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vivi1g01551 PK_Tyr_Ser-Thr 6.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01551 - - gmx:100785385 798.119