Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01517 ATGTCGAATAATCATAATCATAATCATCTTCCTAATGGAGAATCCGAACCCCTCATTCGTCAACCCTTGTTATCTTCTCAAAGATCCATTATCAACTCTACTTCTCAAGTTGCCATCGTTGGGGCCAATGTCTGCCCTATTGAAAGCCTTGATTACGAGATTTTTGAAAACGAATTCTTCAAACAGGATTGGAGGAGTAGAGGGGTTGTTCAGATTTTTCAGTACATATGTATGAAGTGGCTGCTGTGTTTAATGATTGGTATTATTGTTGGTTTTATTGGGTTTTGCAACAATCTTGCTGTTGAAAATCTTGCTGGGATCAAGTTTGTTATCACATCAAATATGATGTTGGAAAGGAGGTTTCCGTTGGCCTTTGTTATATTTTTTGCTTCAAATTTGATTCTCACTCTTTTTGCATGTATAATTACGGCTTTTATAGCGCCTACTGCCGCCGGTTCAGGTATATCAGAGGTGAAGGCTTACTTAAATGGTGTTGATGCACCTGGAATCTTTACTGTACCAACTCTGTTTGTTAAGATTATTGGAAGCATTACGGCAGTTTCATCATCTCTTCTTGTTGGGAAAGCAGGGCCTATGGTGCATACAGGCGCATGTGTGGCATCATTGTTGGGTCAGGGAGGTTCCAAAAGGTATGGAATAACATGGAGATGGTTACGGTTTTTTAAGAACGACCGTGATCGACGTGATCTCATAGTATGTGGATCAGCAGCTGGGATTGCTGCTGCTTTCCGTGCTCCTGTTGGCGGCGTCTTGTTTGCTCTTGAAGAGATGGCATCTTGGTGGAGAACTGCCCTTCTATGGAGAGCTTTCTTTACAACAGCAACAGTTGCAATTTTCCTTCGAGCTATGATTGATGTATGTCTAAGTGGAAAATGCGGGCTATTCGGTAAAGGGGGACTGATAATGTTTGATGCTTATTCGTCTAGTATTTCGTACCATCTGGCAGATGTTCCTCTTGTGTTTATTCTTGCTGTTATAGGAGGGTTACTCGGAAGCCTATTTAATTTTATGACGAATAAAGTTCTTCGCATGTACAATGTTATTAACGAGAAAGGCATCATTTGCAAACTTTTGCTTGCTAGTTTAATCTCCATCTTTACATCTTGTATTCTTTTTGGATTGCCGTTCTTTGCATCTTGCCGACCTTGTCCTGCCGATGCAGTTGAGCCTTGTCCAACAATAGGTCGATCCGGTATCTACAAGAAATTCCAATGTCCTCCCCATCACTATAATGGCCTTGCCAGCCTCGTTTTTAACACAAATGACGATGCTATCAAAAACCTATTTAGCATGAAAACTGACAATGAGTTTGAGTTATCATCGATGTTAATATTTTTCATCATATGTCTCTTTTTAAGTATCATAAGCTGTGGAATTGTTGCCCCGGTTGGTATGTTCGTGCCAATTATCGTGACTGGTGCATCGTATGGACGCATGGTTGGAATATTGGTTGGAAAACGGACCAATCTTTGCGACGGCCTTTACGCTGTACTGGGTGCCGCTTCTCTTCTTGGTGGATCTATGAGGACGACGGTTTCTCTGTGCGTAATTATGCTAGAACTGACGAATAACTTGTTATTGCTACCCTTAATAATGATGGTGCTTTTGGTGTCTAAGAGTGTAGCAAATGTTTTCAATGCAAATGTATATGACCTTATAATGAAAGCCAAAGGTTTGCCTTATTTAGAAACTCATGCCGAACCGTATATGAGGCAGTTAACAGTAGGCGATGTAGTCACAGGCCCGCTTCAGGTATTTAACGGTATCGAGAAGGTTCGCAATATAATGTTCATCCTTAGAACAACAACACACAACGGATTTCCTGTCATTGACGAGCCTCCACGTTTGGAAGCTCCGGTTTTATTTGGCATAATCCTTCGCGACCATCTTATCACATTGTTGAAGAAGAAAGCCTTCTTGCCTACACCTGCGGCGAATAATTACGAAGTATTGAGACAGTTTTCATCAGATGATTTTGCAAAGAAGGGTTCGACCAAACGCATGAAGATCGAGGATATACACTTAACTGAGGAAGAGATGGGCATGTACATTGATCTACATCCATTTACCAATGCTTCGCCTTACACTGTTGTCGAAACAATGTCATTGGCAAAGGCGCTTATACTTTTTCGAGAAGTCGGTTTAAGACACTTGCTTGTTATACCCAAGATCCCCGGTCGATCGCCAGTGGTAGGTATACTGACGCGGCATGATTTCACGCCAGAACATATATTGGGAATGCATCCTTTTCTGGTAAGAAGCAGATGGAAAAGATTAAGATTTTGGCAAACTTTTCTAGAAAAAATTCTTTCTGGCCTGTAA 2343 0.4123 MSNNHNHNHLPNGESEPLIRQPLLSSQRSIINSTSQVAIVGANVCPIESLDYEIFENEFFKQDWRSRGVVQIFQYICMKWLLCLMIGIIVGFIGFCNNLAVENLAGIKFVITSNMMLERRFPLAFVIFFASNLILTLFACIITAFIAPTAAGSGISEVKAYLNGVDAPGIFTVPTLFVKIIGSITAVSSSLLVGKAGPMVHTGACVASLLGQGGSKRYGITWRWLRFFKNDRDRRDLIVCGSAAGIAAAFRAPVGGVLFALEEMASWWRTALLWRAFFTTATVAIFLRAMIDVCLSGKCGLFGKGGLIMFDAYSSSISYHLADVPLVFILAVIGGLLGSLFNFMTNKVLRMYNVINEKGIICKLLLASLISIFTSCILFGLPFFASCRPCPADAVEPCPTIGRSGIYKKFQCPPHHYNGLASLVFNTNDDAIKNLFSMKTDNEFELSSMLIFFIICLFLSIISCGIVAPVGMFVPIIVTGASYGRMVGILVGKRTNLCDGLYAVLGAASLLGGSMRTTVSLCVIMLELTNNLLLLPLIMMVLLVSKSVANVFNANVYDLIMKAKGLPYLETHAEPYMRQLTVGDVVTGPLQVFNGIEKVRNIMFILRTTTHNGFPVIDEPPRLEAPVLFGIILRDHLITLLKKKAFLPTPAANNYEVLRQFSSDDFAKKGSTKRMKIEDIHLTEEEMGMYIDLHPFTNASPYTVVETMSLAKALILFREVGLRHLLVIPKIPGRSPVVGILTRHDFTPEHILGMHPFLVRSRWKRLRFWQTFLEKILSGL 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01517 780 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 26 753 - -
Vivi1g01517 780 PRINTS Plant CLC chloride channel signature 53 61 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vivi1g01517 780 PRINTS Plant CLC chloride channel signature 278 288 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vivi1g01517 780 PRINTS Plant CLC chloride channel signature 264 272 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vivi1g01517 780 PRINTS Plant CLC chloride channel signature 296 303 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vivi1g01517 780 PRINTS Plant CLC chloride channel signature 420 436 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vivi1g01517 780 Pfam CBS domain 700 746 IPR000644 -
Vivi1g01517 780 PRINTS Chloride channel signature 243 262 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vivi1g01517 780 PRINTS Chloride channel signature 556 570 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vivi1g01517 780 PRINTS Chloride channel signature 179 198 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vivi1g01517 780 PRINTS Chloride channel signature 518 537 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vivi1g01517 780 PRINTS Chloride channel signature 500 516 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vivi1g01517 780 PRINTS Chloride channel signature 148 165 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vivi1g01517 780 PRINTS Chloride channel signature 468 488 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vivi1g01517 780 SUPERFAMILY CBS-domain pair 572 746 IPR046342 -
Vivi1g01517 780 Gene3D - 570 748 IPR046342 -
Vivi1g01517 780 Pfam Voltage gated chloride channel 136 549 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vivi1g01517 780 ProSiteProfiles CBS domain profile. 696 757 IPR000644 -
Vivi1g01517 780 SUPERFAMILY Clc chloride channel 57 571 IPR014743 -
Vivi1g01517 780 CDD CBS_pair_voltage-gated_CLC_euk_bac 572 749 - -
Vivi1g01517 780 Gene3D Clc chloride channel 71 569 - -
Vivi1g01517 780 FunFam Chloride channel ClC3 71 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01517 Vivi-Chr1 31772117 31776199 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01517 10 767 Ion Channels AT5G33280 73.219 0.0 1123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01517 K05016 - gmx:100817901 1214.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g01517 1 31772117 31776199 Vivi1g01517 1 31772117 31776199 ECH