Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01516 ATGGATTATACTGTTTTGTACTTGGTGATATTGTTGCAATTGTTGCAATTTTCAACAATTTTTGGGTCTGAAGTTGTTTTACAGACTAAGGATTGTGGTTATAATCGGGTGGTAGCGAATTCGTATTCGAGTCATGGTGAGGAATTGTTTTACATAAATGGGAATGTTGTGAACAAAGATGGTTTCTGTAAAGCTCTGAAATTGTATAGTGCGAACGGTTGTGATGTGAATGAATACTTTGAGAGCAATCACTGTGTTCTGGATTTGGATTTGGATGTTTCTTTTGTGAATTTGCCTTCAAAGGGAGGAAGGAAACTTTTGCAGAAAGATTTGAACGATAATTCCACAACACAAGGAGATTCTAAGCCTGTGTCAAGTTACCAAGTTGGGATTTTTGCCGGTGGAGCTTTATTGGCATGTTGTGCTATTGTTTGTCCTTGTTTCTATGCTAAGAGAAGGAAGGCAACTGCTCATACTGTTCTGGAAAAGGACTCAAATTCAATGGATTTAGCTTCTTCCTTTGAACCATCTGTTTCTGATAAGATCCCATCTAGTCCACTTCGGGTGCCACAAAGTCCATCAAGATTCTCAATGTCTCCGAAACTCAGTAGACTTCAATCATTACATCTCAACCTCAGTCAGGTTTCTAAAGCTACCCGTAATTTTTCAGAAACATTACAAATAGGAGAAGGAGGTTTTGGAACTGTCTACAGGGCAAATTTAGATGATGGCCTGGTCGTGGCTGTAAAACGCGCAAAAAGGGAACATTTTGAGAGTTTGAGAACAGAATTCAGCAGTGAAGTTGAACTTCTGGCCAAAATTGATCATCGAAACCTGGTGAAACTACTTGGTTATATTGACAAAGGAAACGAACGTATCCTTATTACAGAGTTTGTGCCAAATGGTACTCTTCGAGAACATTTAGATGGTTTGTTTGGAAAAATCCTGGATTTCAATCAGCGTCTTGAAATCGCAATCGATGTTGCTCATGGATTGACCTATTTGCATCTGTATGCCGAAAAACAAATTATCCATCGAGATGTGAAATCATCCAACATTCTTCTGACTGAAAGGATGCGAGCTAAAGTCGCTGATTTTGGATTTGCAAAGCTTGGTCCTGTAAGCAATGACCATACACACATTTCTACCAAAGTGAAGGGAACAGTTGGTTATCTGGATCCTGAGTATATGAAAACCTACCATCTCACTCCCAAAAGTGATGTTTACTCATTTGGAATTTTGCTTTTAGAAATTCTGACTGGCCGCCGTCCTGTGGAAATGAAAAAGACTCCTGAAGAGCGAGTTACATTAAGATGGGCCTTCAGGAAATATAATGAAGGAAATATGGTGGAACTGCTTGATCCTTTAATGCAAGAAGCTGTAAAAACAGACATTGTTATGAAGATGTTAGATTTGGCATTTAGCTGTGCAGCACCAGTAAGATCAGATAGACCTGACATGAAAGCAGTTTGCGAACAATTATGGGCAATAAGAGCAGATTACCTCAAGAGCAGTAGTGAAACTGCAAGGAGAGAATGA 1539 0.3918 MDYTVLYLVILLQLLQFSTIFGSEVVLQTKDCGYNRVVANSYSSHGEELFYINGNVVNKDGFCKALKLYSANGCDVNEYFESNHCVLDLDLDVSFVNLPSKGGRKLLQKDLNDNSTTQGDSKPVSSYQVGIFAGGALLACCAIVCPCFYAKRRKATAHTVLEKDSNSMDLASSFEPSVSDKIPSSPLRVPQSPSRFSMSPKLSRLQSLHLNLSQVSKATRNFSETLQIGEGGFGTVYRANLDDGLVVAVKRAKREHFESLRTEFSSEVELLAKIDHRNLVKLLGYIDKGNERILITEFVPNGTLREHLDGLFGKILDFNQRLEIAIDVAHGLTYLHLYAEKQIIHRDVKSSNILLTERMRAKVADFGFAKLGPVSNDHTHISTKVKGTVGYLDPEYMKTYHLTPKSDVYSFGILLLEILTGRRPVEMKKTPEERVTLRWAFRKYNEGNMVELLDPLMQEAVKTDIVMKMLDLAFSCAAPVRSDRPDMKAVCEQLWAIRADYLKSSSETARRE 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01516 512 PANTHER OS01G0750732 PROTEIN 106 498 - -
Vivi1g01516 512 Gene3D Transferase(Phosphotransferase) domain 1 299 511 - -
Vivi1g01516 512 ProSiteProfiles Protein kinase domain profile. 222 496 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g01516 512 SUPERFAMILY Protein kinase-like (PK-like) 204 497 IPR011009 -
Vivi1g01516 512 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 3 194 298 - -
Vivi1g01516 512 Gene3D Phosphorylase Kinase; domain 1 190 298 - -
Vivi1g01516 512 CDD STKc_IRAK 228 494 - -
Vivi1g01516 512 Pfam Protein tyrosine and serine/threonine kinase 227 494 IPR001245 GO:0004672|GO:0006468
Vivi1g01516 512 SMART serkin_6 222 496 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g01516 512 ProSitePatterns Serine/Threonine protein kinases active-site signature. 343 355 IPR008271 GO:0004672|GO:0006468
Vivi1g01516 512 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 3 299 508 - -
Vivi1g01516 512 ProSitePatterns Protein kinases ATP-binding region signature. 228 250 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01516 Vivi-Chr1 31763065 31767507 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01516 128 498 Receptor kinase-like Gene Family AT3G46290 38.845 1.27e-73 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Vivi1g01516 PK_Tyr_Ser-Thr 1.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01516 - - vvo:131633181 994.956