Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01515 ATGGATTATACTGTTTTGTACTTGGTGATATTGTTGCAATTGTTGCAATTTTCAACAATTTTTGGGTCTGAAGTTGTTTTACAGACTAAGGATTGTGGTTATAATCGGGTGGTAGCGAATTCGTATTCGAGTCATGGTGAGGAATTGTTTTACATAAATGGGAATGTTGTGAACAAAGATGGTTTCTGTAAAGCTCTGAAATTGTATAGTGCGAACGGTTGTGATGTGAATGAATACTTTGAGAGCAATCACTGTGTTCTGGATTTGGATTTGGATGTTTCTTTTGTGAATTTGCCTTCAAAGGGAGGAAGGAAACTTTTGCAGAAAGATTTGAACGATAATTCCACAACACAAGGAGATTCTAAGCCTGTGTCAAGTTACCAAGTTGGGATTTTTGCCGGTGGAGCTTTATTGGCATGTTGTGCTATTGTTTGTCCTTGTTTCTATGCTAAGAGAAGGAAGGCAACTGCTCATACTGTTCTGGAAAAGGACTCAAATTCAAGACATGCTATGAATTCGGAAGAAAAGAAGGTGGATTTAGCTTCTTCCTTTGAACCATCTGTTTCTGATAAGATCCCATCTAGTCCACTTCGGGTGCCACAAAGTCCATCAAGATTCTCAATGTCTCCGAAACTCAGTAGACTTCAATCATTACATCTCAACCTCAGTCAGGTTTCTAAAGCTACCCGTAATTTTTCAGAAACATTACAAATAGGAGAAGGAGGTTTTGGAACTGTCTACAGGGCAAATTTAGATGATGGCCTGGTCGTGGCTGTAAAACGCGCAAAAAGGGAACATTTTGAGAGTTTGAGAACAGAATTCAGCAGTGAAGTTGAACTTCTGGCCAAAATTGATCATCGAAACCTGGTGAAACTACTTGGTTATATTGACAAAGGAAACGAACGTATCCTTATTACAGAGTTTGTGCCAAATGGTACTCTTCGAGAACATTTAGATGGTTTGTTTGGAAAAATCCTGGATTTCAATCAGCGTCTTGAAATCGCAATCGATGTTGCTCATGGATTGACCTATTTGCATCTGTATGCCGAAAAACAAATTATCCATCGAGATGTGAAATCATCCAACATTCTTCTGACTGAAAGGATGCGAGCTAAAGTCGCTGATTTTGGATTTGCAAAGCTTGGTCCTGTAAGCAATGACCATACACACATTTCTACCAAAGTGAAGGGAACAGTTGGTTATCTGGATCCTGAGTATATGAAAACCTACCATCTCACTCCCAAAAGTGATGTTTACTCATTTGGAATTTTGCTTTTAGAAATTCTGACTGGCCGCCGTCCTGTGGAAATGAAAAAGACTCCTGAAGAGCGAGTTACATTAAGATGGGCCTTCAGGAAATATAATGAAGGAAATATGGTGGAACTGCTTGATCCTTTAATGCAAGAAGCTGTAAAAACAGACATTGTTATGAAGATGTTAGATTTGGCATTTAGCTGTGCAGCACCAGTAAGATCAGATAGACCTGACATGAAAGCAGTTTGCGAACAATTATGGGCAATAAGAGCAGATTACCTCAAGAGCAGTAGTGAAACTGCAAGGAGAGAATGA 1569 0.392 MDYTVLYLVILLQLLQFSTIFGSEVVLQTKDCGYNRVVANSYSSHGEELFYINGNVVNKDGFCKALKLYSANGCDVNEYFESNHCVLDLDLDVSFVNLPSKGGRKLLQKDLNDNSTTQGDSKPVSSYQVGIFAGGALLACCAIVCPCFYAKRRKATAHTVLEKDSNSRHAMNSEEKKVDLASSFEPSVSDKIPSSPLRVPQSPSRFSMSPKLSRLQSLHLNLSQVSKATRNFSETLQIGEGGFGTVYRANLDDGLVVAVKRAKREHFESLRTEFSSEVELLAKIDHRNLVKLLGYIDKGNERILITEFVPNGTLREHLDGLFGKILDFNQRLEIAIDVAHGLTYLHLYAEKQIIHRDVKSSNILLTERMRAKVADFGFAKLGPVSNDHTHISTKVKGTVGYLDPEYMKTYHLTPKSDVYSFGILLLEILTGRRPVEMKKTPEERVTLRWAFRKYNEGNMVELLDPLMQEAVKTDIVMKMLDLAFSCAAPVRSDRPDMKAVCEQLWAIRADYLKSSSETARRE 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01515 522 SMART serkin_6 232 506 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g01515 522 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 3 309 518 - -
Vivi1g01515 522 MobiDBLite consensus disorder prediction 186 206 - -
Vivi1g01515 522 MobiDBLite consensus disorder prediction 187 206 - -
Vivi1g01515 522 CDD STKc_IRAK 238 504 - -
Vivi1g01515 522 SUPERFAMILY Protein kinase-like (PK-like) 214 507 IPR011009 -
Vivi1g01515 522 PANTHER OS01G0750732 PROTEIN 106 508 - -
Vivi1g01515 522 ProSitePatterns Protein kinases ATP-binding region signature. 238 260 IPR017441 GO:0005524
Vivi1g01515 522 Pfam Protein tyrosine and serine/threonine kinase 237 504 IPR001245 GO:0004672|GO:0006468
Vivi1g01515 522 ProSitePatterns Serine/Threonine protein kinases active-site signature. 353 365 IPR008271 GO:0004672|GO:0006468
Vivi1g01515 522 Gene3D Transferase(Phosphotransferase) domain 1 309 521 - -
Vivi1g01515 522 Gene3D Phosphorylase Kinase; domain 1 200 308 - -
Vivi1g01515 522 ProSiteProfiles Protein kinase domain profile. 232 506 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g01515 522 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 3 204 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01515 Vivi-Chr1 31763065 31767507 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01515 128 507 Receptor kinase-like Gene Family AT3G46290 38.501 1.56e-73 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Vivi1g01515 PK_Tyr_Ser-Thr 2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01515 - - vvo:131633181 1024.23