Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01427 ATGGGAAGCAACAACGTTGAGAAGATCCCTAGCAATAACAGCACTGGAAGTTCAGAAACCACTATTGAGATAAAGCTCAAAACACTGGATTCACAAACTTATTCCCTCAAAGTTGATAAACAGATGCCAGTCCCTGCTCTGAAAGAACAGATTGCTTCTGTAACTGGAGTGATATCAGAACAGCAGCGCTTAATTTGTCAAGGGAAAGTTCTCAAGGATGATCAACTATTGTCTGCCTACCACGTTGAAGATGGTCACACATTGCATCTGGTTGTGAGGCAACCTGATCTGCCACCTCCAGGAAGTCTGCCCAATCATGCAGTGACTGAGCCAAATTCAAGCACAAGCCATAGTCACGGTACTCAAATCGCTCCAGGTGTATTCATTGAAACTTTTAATGTTCCTGTTCACGGCGAGGGAGTTCCACCTGAAATAAATAGGATTGTTTCCGCTGTTCTTGGCTCTATCGCTGGACTTCCAAATTTCGCAAGTGGTGGTGAAGGGGTTATTGTCAGGGAGCATGATTCCCAAGGCCTTGGAAGAACTTCAGATTCTAGTGGAGTATCAGACCCGGACCGTCCCTTACCTGATCAAACTGGTTTACGTAGTTTGTCGGATAGATTACGGAATACTTTTGGATTTCCGGCATCAGTCTCTCTAGGGTCTTCGCAGCCTCCTGTCATTCCTGACTCTTTGACAACTTTGTCCCAGTATCTAAGTCATATGAGCCATGAATTTGATACAATTGTCAGAGAAGGGGAGAATAATGCCCAAGCAGCTGAGGCTCATAGTAATGATGAAGTGGGATCTGTTACTTCACGTTTGGGTTCAACACCGGAAAATCTTTCATCACCCGCATCCTTGGCAGAAGTCTTGCGTTCTACCAGACGAATGATCACTGAACAAGCTGGGGAGTGCATACTTCAACTGGCAAGACAACTGGAGAATCAAACAGATGTAACTGATGCCCAATTGCGATCAACTGCCCAATCTAGGGCTTTGGCGACTGGAGTATTGTTTTATAACCTTGGTGCGTTTTTACTTGAGCTTGGTCGAACAACCATGACAGTGCGTATGGGTCAAACACCGTCTGAAGCTATAGTTAATGGTGGACCCGCAGTTTTTATATCACCTACTGGTCCTAATCATATCATGGTTCAGCCTCTTCCTTTTCAACCTGGAGCAAGCTTTGGTGCTGTCCCTGTAGGAGCTGCACAGTCTGACTCAACTTTAGGTAGTGGACTTGGCTCAAGTTTTTTCCCAAGACGTATCGATATACAGATAAGACGAGGCACTTCAACAACCACACCGAATGCCAATCAAGAAGAGCGCGGGGATACTCAACCTACTTCAGTTCAAAGAAATCCAGCTGAAAGTTCTGCTAATCAAGCAAGCGCTAGGCGATCAGATGCATCTATTGCTGGAGAGTCAGGAATAAGGATAGTGCCGATTAGAACCATGGTTGCAACAGTACCTGGTCCCTTGAGCCGTCCTTCAGAATCATCTGCTACTTCTACAGGGCTTTACCATCCAATTATTGGGAGATTTCAACGTGTAACTACAGGACATGCAAATAGTGAACCGGGATCTCAATCAGCAAGTCAGCATCATGCTGCACAACATTCAACTCCTGAATCCATATTGCCAAGGCAAAGCGCTGAAGACTCTGCAAGGAATGGTACCTCGTCAACTCCAAACACGAGACAAGAGCTATCTAGTTCACGTGTTGTAAATATCAATATTCTGTCAGCTGGTGGACCCCAAAACAATCAAGAGTCTGATAGACAGATACCAAGCAATGTAATTCAGTTTTTAAGAACACTCTTTCCTGGTGGAGAAATTCACGTGGAGGATTCAAGCTTACAAGGAGTAAATGCGGGTTCCGCCGCAGTTCATGCTGCAACATCAACAGCTGCTCCCCAAGTCCCTACGGCTGAACCCCATGTCAGTGATGAAGGAGTATTTTTGTCAAATGTACTCCGTGAGATCATGCCGATCATATCCCAACAAATAGGATCTGAAATAAATTCTTCTGATGATCAAATGGCTCAAGATTCGTCGACCCAGGTTGAAACTAACGCTGGGACATCACGGAGGCACAGAGGTTCTGAACCAAGCGCTCCAGATCCAAAACGCCAAAAGATGGAATGA 2151 0.4528 MGSNNVEKIPSNNSTGSSETTIEIKLKTLDSQTYSLKVDKQMPVPALKEQIASVTGVISEQQRLICQGKVLKDDQLLSAYHVEDGHTLHLVVRQPDLPPPGSLPNHAVTEPNSSTSHSHGTQIAPGVFIETFNVPVHGEGVPPEINRIVSAVLGSIAGLPNFASGGEGVIVREHDSQGLGRTSDSSGVSDPDRPLPDQTGLRSLSDRLRNTFGFPASVSLGSSQPPVIPDSLTTLSQYLSHMSHEFDTIVREGENNAQAAEAHSNDEVGSVTSRLGSTPENLSSPASLAEVLRSTRRMITEQAGECILQLARQLENQTDVTDAQLRSTAQSRALATGVLFYNLGAFLLELGRTTMTVRMGQTPSEAIVNGGPAVFISPTGPNHIMVQPLPFQPGASFGAVPVGAAQSDSTLGSGLGSSFFPRRIDIQIRRGTSTTTPNANQEERGDTQPTSVQRNPAESSANQASARRSDASIAGESGIRIVPIRTMVATVPGPLSRPSESSATSTGLYHPIIGRFQRVTTGHANSEPGSQSASQHHAAQHSTPESILPRQSAEDSARNGTSSTPNTRQELSSSRVVNINILSAGGPQNNQESDRQIPSNVIQFLRTLFPGGEIHVEDSSLQGVNAGSAAVHAATSTAAPQVPTAEPHVSDEGVFLSNVLREIMPIISQQIGSEINSSDDQMAQDSSTQVETNAGTSRRHRGSEPSAPDPKRQKME 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01427 716 MobiDBLite consensus disorder prediction 675 700 - -
Vivi1g01427 716 MobiDBLite consensus disorder prediction 522 574 - -
Vivi1g01427 716 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 9 698 - -
Vivi1g01427 716 Pfam Ubiquitin family 24 94 IPR000626 GO:0005515
Vivi1g01427 716 MobiDBLite consensus disorder prediction 702 716 - -
Vivi1g01427 716 MobiDBLite consensus disorder prediction 428 474 - -
Vivi1g01427 716 FunFam Large proline-rich protein BAG6 14 107 - -
Vivi1g01427 716 MobiDBLite consensus disorder prediction 675 716 - -
Vivi1g01427 716 MobiDBLite consensus disorder prediction 177 204 - -
Vivi1g01427 716 MobiDBLite consensus disorder prediction 98 121 - -
Vivi1g01427 716 MobiDBLite consensus disorder prediction 262 282 - -
Vivi1g01427 716 SMART ubq_7 22 93 IPR000626 GO:0005515
Vivi1g01427 716 SUPERFAMILY Ubiquitin-like 11 110 IPR029071 -
Vivi1g01427 716 MobiDBLite consensus disorder prediction 428 470 - -
Vivi1g01427 716 ProSiteProfiles Ubiquitin domain profile. 22 97 IPR000626 GO:0005515
Vivi1g01427 716 Gene3D - 15 109 - -
Vivi1g01427 716 MobiDBLite consensus disorder prediction 106 121 - -
Vivi1g01427 716 PRINTS Ubiquitin signature 74 95 IPR019956 -
Vivi1g01427 716 PRINTS Ubiquitin signature 53 73 IPR019956 -
Vivi1g01427 716 PRINTS Ubiquitin signature 32 52 IPR019956 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01427 Vivi-Chr1 29665346 29676867 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01427 22 93 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 37.500 6.93e-09 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01427 K23390 - gmx:100783070 1051.97