Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01422 ATGGCTGAACAAACTGAGAAGGCTTATCTGAAGCAACCTAAAGTGTTTCTATGCTCGAAGAAATCTGGGAAAGGAAAGAGGCCTGGTAAAGGCGGAAATCGGTTTTGGAAATCTGTTGGTCTTGGATTTAAGACTCCCAAGGAAGCCACTGAAGGAACCTATATTGACAAGAAGTGCCCTTTCACTGGCAATGTTTCCATCCGAGGTCGTATTATAGCTGGAACTTGCCACAGTGCTAAGATGAATAGGACTATTATTGTTAGGAGGAATTATCTTCACTTTATTAAGAAGTATCAAAGATATGAGAAGAGACATTCTAATATCCCTGCTCATGTATCACCCTGCTTCCGTGTTAAAGAAGGAGATCATGTTATTATTGGCCAATGCAGGCCACTCTCCAAGACAGTGAGGTTCAACGTCTTGAAAGTGATCCCAGCTGGATCATCAAGTGGTGCTAAGAAGGCATTTGGTGGAATTTGA 480 0.4208 MAEQTEKAYLKQPKVFLCSKKSGKGKRPGKGGNRFWKSVGLGFKTPKEATEGTYIDKKCPFTGNVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAHVSPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSGAKKAFGGI 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01422 159 ProSitePatterns Ribosomal protein S17 signature. 121 133 IPR019979 GO:0003735|GO:0005840|GO:0006412
Vivi1g01422 159 Pfam Ribosomal protein S17 74 142 IPR000266 GO:0003735|GO:0005840|GO:0006412
Vivi1g01422 159 Pfam Ribosomal_S17 N-terminal 4 72 IPR032440 -
Vivi1g01422 159 SUPERFAMILY Nucleic acid-binding proteins 68 147 IPR012340 -
Vivi1g01422 159 PRINTS Ribosomal protein S17 family signature 88 111 IPR000266 GO:0003735|GO:0005840|GO:0006412
Vivi1g01422 159 PRINTS Ribosomal protein S17 family signature 131 138 IPR000266 GO:0003735|GO:0005840|GO:0006412
Vivi1g01422 159 PRINTS Ribosomal protein S17 family signature 121 131 IPR000266 GO:0003735|GO:0005840|GO:0006412
Vivi1g01422 159 Gene3D - 1 158 - -
Vivi1g01422 159 FunFam 40S ribosomal protein S11 1 158 - -
Vivi1g01422 159 NCBIfam 30S ribosomal protein S17 53 143 IPR028333 -
Vivi1g01422 159 PANTHER 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER 10 150 IPR000266 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01422 Vivi-Chr1 29652741 29654582 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01422 1 159 Cytoplasmic Ribosomal Protein Gene Family AT5G23740 87.421 1.70e-95 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01422 K02949 - mof:131157891 280.796
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g01422 1 29652741 29654582 Vivi1g01422 1 29652741 29654582 ECH