Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01421 ATGTGTGTGCAAGAGGATGAACAAGTTGATCAAGATAATGATAAAACAATTTCATGGCCTTTGCATTGTGATCTATTGCATGCCCAGATGGATAATTCAGAAAAAGACTCTTCTTTTGGTGTTTCCAATGCCCAAATCAGTGTTGCAGATTCATTTCCTCTGGAAAGTATTTGTGAAGATGCAGTGATTACAGAGAAAAAACAGAATGTGGTGAATTTTGTCCCAACGCTTCGGTCAGGAGAGTGGTCTGATATCGGAGGTCGGCCTTACATGGAGGATACTCACATATGCATCGGAGACTTGGCGAAGAAATTCGGTTATGATGCTGTCTGCGACAAAGCTGTTTCCTTTTATGGTGTATTTGATGGACATGGAGGGAAGAGTGCTGCACAATTTGTTCGCGATCATCTTCCGAGGGTGATTGTTGAGGATTCTGACTTTCCTCTTGAACTTGAGAAGGTGGTCACGAGGTCGTTTTTGGAGACTGATTCGGAGTTTGCGAAAACATGCTCTGCTGAGTCTTCCCTTTCTTCTGGTACAACGGCATTGACTGCAATTATATTTGGAAGATCTCTACTCGTGGCTAATGCTGGAGACTGTCGCGCTGTTTTGTCCCGGGCTGGAGGAGCTATAGAAATGTCCAAAGATCACAATCCCTTATGCATGAAAGAAAGGATGAGGATTGAGTCGCTCGGCGGATTTGTCAATGATGGTTACTTGAACGGACAGTTAGGCGTGACGCGTGCTCTAGGAAACTGGCATCTTGAAGGAATGAAGGAAATGAGTGGAAGAGGTGGACCATTGAGTGCTGAGCCAGAACTTAAACTGATAACATTGACGAAAGACGACGAGTTTTTGATAATCGGAAGCGACGGAATATGGGAAGTTTTTCGTAGCCAAAATGCGGTCGATTTTGCTAGGAGGAGGCTTCAACAGCATAATGATGTTAAACAATGTTGCAAGGAAATAGTAGGTGAAGCAATAAAGAGAGGTGCAACAGATAATTTAACTGTTGTGATGGTGTGTTTTCAATCAGATCCACCACCAGCTATGATTATTGAAAGGCCTAATAGATTTAGGAGAAGTATATCTGCTGAGGGACTTCAAAATCTTAAATGCCTGCTAGAAGGATAG 1134 0.4295 MCVQEDEQVDQDNDKTISWPLHCDLLHAQMDNSEKDSSFGVSNAQISVADSFPLESICEDAVITEKKQNVVNFVPTLRSGEWSDIGGRPYMEDTHICIGDLAKKFGYDAVCDKAVSFYGVFDGHGGKSAAQFVRDHLPRVIVEDSDFPLELEKVVTRSFLETDSEFAKTCSAESSLSSGTTALTAIIFGRSLLVANAGDCRAVLSRAGGAIEMSKDHNPLCMKERMRIESLGGFVNDGYLNGQLGVTRALGNWHLEGMKEMSGRGGPLSAEPELKLITLTKDDEFLIIGSDGIWEVFRSQNAVDFARRRLQQHNDVKQCCKEIVGEAIKRGATDNLTVVMVCFQSDPPPAMIIERPNRFRRSISAEGLQNLKCLLEG 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01421 377 CDD PP2Cc 78 343 IPR001932 -
Vivi1g01421 377 ProSitePatterns PPM-type phosphatase domain signature. 117 125 IPR000222 GO:0043169
Vivi1g01421 377 ProSiteProfiles PPM-type phosphatase domain profile. 78 343 IPR001932 -
Vivi1g01421 377 Pfam Protein phosphatase 2C 90 335 IPR001932 -
Vivi1g01421 377 PANTHER PROTEIN PHOSPHATASE 2C 65 341 IPR015655 GO:0004722|GO:0006470
Vivi1g01421 377 FunFam Probable protein phosphatase 2C 22 61 346 - -
Vivi1g01421 377 SMART PP2C_4 68 341 IPR001932 -
Vivi1g01421 377 SUPERFAMILY PP2C-like 67 344 IPR036457 -
Vivi1g01421 377 Gene3D - 59 347 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01421 Vivi-Chr1 29628377 29630531 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01421 44 377 PP2C-type Phosphatase Gene Family AT2G25620 56.250 6.17e-130 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Vivi1g01421 PP2C 1.2e-66 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01421 K14803 - gmx:100782648 625.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g01421 1 29628377 29630531 Vivi1g01421 1 29628377 29630531 ECH