Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01419 ATGGGTTCAACCTCTAGTCGACTCGGGTCTCGTCCTTCTCCTCCCAGGGTCAACAACCATCGCTTCAGTTTCTCTTCCTTTCTCTGCGGCTCCTCCACCTCTCGCTCCATTTCTCAGATGGAAGAACATCAATATGAAGAGCTTCATGTTAATTCGGCTAGACATTTCAATGATGAAATTCAGAAGGTCCCTGAGGAATCCTCGTTATCATGTACAGAGGAAGCTAGAATCAGTTGCTGCCCTCAAGCTGAAACTTCAATTTCAACCGATATGAGAACTGAGTTCTGCGGGAATGATACTGTTGAAGGTTCTTATGGAAATGTTGCAACGAGTGCTCAGAGGAATTGCTTGTCTGATCATAAGGATCTAGTTTCTCCTGATCAGGTATGTGCTGGTCATAGTCATCCTGAATCATATAGTGATGGTAACAACACTGCTAGTAGTAGTAGTACTTCGTTTGTTGAACAACGGTCTTCAGATCCAGTCTCTGTAAATGATTTTACTAACATGGATAGAATCAATAATGTTGATGATCCAGTGTTTAGTGGTGTCTCTCGAATCTCTCATCATGAGACCGTGCAACCAAGGAGCTCAATCTCTCAAGAGCATGGAAATGCCAGTTCTGGTGAAATTTCTGTTGAGGTTGACACAAATGCTGGCATATCTATCCATAGTTCTTCCACTCATGTTGCTCAAGCGTCGGATGCACCACCAACTCCTCAAATGCCTGAAGATGAATCTCGTCGCGAAGCAATACCTTCAGGCTTAGGTATTTTTGTGTCCAATCGGGAAATAGTGCAAGGAAATGATGGTCTGTTTCAAGTTGACGTGGTCGCAATATCCTCCAATATTTTGTCTGGCAGCAATACAGATGCGGATGATCAGGATGCCAGAAGGAATGGTAGAAGATTATTTTGGGATGCTTTTTCACAACGTAGTTCAAGAAGGTTTGGTGATTCTCCAACCATCGTTATCTCCACGGGAGGTGCTGATGATTCAGGATCTCAGGATCGGTGGCAGGTTGATTTTGATGAGGATTTATCAAATGACGGGCTTGGACGTCCGCCCAGATATAGGGGCAGTAGAATTCGCAGATTGAGTGAAAGAGTGCGACACTCAAGATCTGAGATCTGGGAAAGGCTTCGTGGAGGCCTTGATGAGATTGGTCGGCTGAACTCTTCATGTCCATTAGGACTTCATGCAGACGGTATGTGCTCGTGCGAGTCATTCCCAATGGCTGAAGAATCTAGCTCTCGGTCAAGTATTTCAAGAATAGTCATGCTGGCTGAGGCTCTGTTTGAGGTTTTAGATGAAATTCACCGACAACCTTCATCCCTTTCCCTATCCACGCTCTCACTCCCTGCACCTGAATCAGTCGTGGACTCTTTCCCTCTGAAGTCTCACAAAAAGGTTGATGCAGCTGATGGAGGCAATGATGCTGAACAATGTTACATATGCTTGGCGGAGTATGAAGATGGGGACCAAATACGAGTTCTTCCTTGCAAGCATGAATATCACATGTCGTGTGTCGATAAGTGGCTGAAGGAAATACATGGGGTATGTCCTCTGTGTCGCGGCCATGTTTGTGGAGGCTCAACAGAGCAGTCAGTTCACTCAGAAGTTCAGTCAATAGTTGAAATTTAG 1644 0.4501 MGSTSSRLGSRPSPPRVNNHRFSFSSFLCGSSTSRSISQMEEHQYEELHVNSARHFNDEIQKVPEESSLSCTEEARISCCPQAETSISTDMRTEFCGNDTVEGSYGNVATSAQRNCLSDHKDLVSPDQVCAGHSHPESYSDGNNTASSSSTSFVEQRSSDPVSVNDFTNMDRINNVDDPVFSGVSRISHHETVQPRSSISQEHGNASSGEISVEVDTNAGISIHSSSTHVAQASDAPPTPQMPEDESRREAIPSGLGIFVSNREIVQGNDGLFQVDVVAISSNILSGSNTDADDQDARRNGRRLFWDAFSQRSSRRFGDSPTIVISTGGADDSGSQDRWQVDFDEDLSNDGLGRPPRYRGSRIRRLSERVRHSRSEIWERLRGGLDEIGRLNSSCPLGLHADGMCSCESFPMAEESSSRSSISRIVMLAEALFEVLDEIHRQPSSLSLSTLSLPAPESVVDSFPLKSHKKVDAADGGNDAEQCYICLAEYEDGDQIRVLPCKHEYHMSCVDKWLKEIHGVCPLCRGHVCGGSTEQSVHSEVQSIVEI 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01419 547 MobiDBLite consensus disorder prediction 127 171 - -
Vivi1g01419 547 MobiDBLite consensus disorder prediction 1 20 - -
Vivi1g01419 547 MobiDBLite consensus disorder prediction 137 171 - -
Vivi1g01419 547 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 447 529 IPR013083 -
Vivi1g01419 547 Pfam Ring finger domain 482 525 IPR001841 -
Vivi1g01419 547 SMART ring_2 483 524 IPR001841 -
Vivi1g01419 547 MobiDBLite consensus disorder prediction 189 209 - -
Vivi1g01419 547 MobiDBLite consensus disorder prediction 226 249 - -
Vivi1g01419 547 FunFam Putative RING zinc finger domain superfamily protein 450 530 - -
Vivi1g01419 547 ProSiteProfiles Zinc finger RING-type profile. 483 525 IPR001841 -
Vivi1g01419 547 SUPERFAMILY RING/U-box 471 528 - -
Vivi1g01419 547 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 542 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01419 Vivi-Chr1 29587059 29590486 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01419 394 529 C3H Transcription Factor Family AT5G45290 52.318 4.00e-39 148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g01419 1 29587059 29590486 Vivi1g01419 1 29587059 29590486 ECH