Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01412 ATGGCTTTTCACGACCAGAATTTCATACAATTGGAACCGGAGAGGAGAGAGAAAAGCATGGATCGGAATCGGAGCGAGAACAATTGCGAAACGGAAGAGTTAAGAGAAAACAAAGCGGAGATATTAGGTCATCCACTTTACGGTCAGTTGTTATCGGCACATGTTTCGTGTCTCCGAATTGCAACTCCGGTGGACCAGCTTCCGAGAATCGATGCTCAGCCTCAACAATCACAGCGCGTTCTTCACAAATACTCTTCTATTGGAATCGGAAACATGGATCACAAAGAGCTTGATCACTTTATGGTCATATTTTACATTTGGTCCTTTGTTAATTTGTTGAAGACGCATTATGTTAGTTTGCTGTGCGCATTTAAAGAACAGCTGCAACATGTTCATGTTCATGCCATGGAGGCAATGATGCCTTGCTGGGATCTTCAGCAATCTCTGCAAAGCTTGACAGGTGTATCTTCGGGTGAGGGAACGGGAGCAACAATGTCAGCCGATGAAGAGGAGCAGACAGAAAGCAATGCCAAGTTGTACAACGAAGGAAGCAGCCTTGATGGCATTGATACTCTTGACTTTGGTCCTCTTGTCCTCACTGAGACTGAAAGGTCTTTGATGGAGCGAATTAAGCTTGAACGCAAGCATCAGCTAGAACAGGGTTACAAGGAGAAAATTGTTGATGTAAGAGAAGAAATTGTAGGACTGAGAAGAACTGGGAAGGTCCCTGGACACATCACGTCACTTCTGAAAGCTTGGTGGCAATCACATTCTAAATGGCCCTATCCTACTGAGGAAGACAAAGCTAGACTGGTGCAAGAAACAGGCTTGCAATTAAAACAGATAAACAATTGGTTCATCAATCAAAGGAAAAGGAATGCTAGTAACTCCGAAACCGACTATGATAGGTTTTGGAGAGATATATGA 927 0.4358 MAFHDQNFIQLEPERREKSMDRNRSENNCETEELRENKAEILGHPLYGQLLSAHVSCLRIATPVDQLPRIDAQPQQSQRVLHKYSSIGIGNMDHKELDHFMVIFYIWSFVNLLKTHYVSLLCAFKEQLQHVHVHAMEAMMPCWDLQQSLQSLTGVSSGEGTGATMSADEEEQTESNAKLYNEGSSLDGIDTLDFGPLVLTETERSLMERIKLERKHQLEQGYKEKIVDVREEIVGLRRTGKVPGHITSLLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNASNSETDYDRFWRDI 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01412 308 MobiDBLite consensus disorder prediction 11 31 - -
Vivi1g01412 308 Pfam KNOX2 domain 116 153 IPR005541 GO:0003677|GO:0005634
Vivi1g01412 308 MobiDBLite consensus disorder prediction 156 176 - -
Vivi1g01412 308 Pfam KNOX1 domain 38 78 IPR005540 GO:0003677|GO:0005634
Vivi1g01412 308 Pfam Homeobox KN domain 253 292 IPR008422 GO:0003677|GO:0006355
Vivi1g01412 308 SMART KNOX2_2 86 154 IPR005541 GO:0003677|GO:0005634
Vivi1g01412 308 MobiDBLite consensus disorder prediction 156 170 - -
Vivi1g01412 308 SUPERFAMILY Homeodomain-like 239 293 IPR009057 -
Vivi1g01412 308 ProSiteProfiles ELK domain profile. 213 233 IPR005539 GO:0003677
Vivi1g01412 308 ProSitePatterns 'Homeobox' domain signature. 271 294 IPR017970 GO:0000981|GO:0006355
Vivi1g01412 308 SMART KNOX1_2 35 79 IPR005540 GO:0003677|GO:0005634
Vivi1g01412 308 CDD homeodomain 245 292 IPR001356 GO:0003677
Vivi1g01412 308 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 89 294 - -
Vivi1g01412 308 Gene3D - 240 294 - -
Vivi1g01412 308 ProSiteProfiles 'Homeobox' domain profile. 261 296 IPR001356 GO:0003677
Vivi1g01412 308 SMART HOX_1 236 300 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01412 Vivi-Chr1 29409689 29415340 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01412 38 293 Homeobox Transcription Factor Family AT5G11060 71.264 1.80e-125 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Vivi1g01412 KNOX1 7.7e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01412 - - pcin:129320455 413.305