Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01411 ATGGCTTTTCACGACCAGAATTTCATACAATTGGAACCGGAGAGGAGAGAGAAAAGCATGGATCGGAATCGGAGCGAGAACAATTGCGAAACGGAAGAGTTAAGAGAAAACAAAGCGGAGATATTAGGTCATCCACTTTACGGTCAGTTGTTATCGGCACATGTTTCGTGTCTCCGAATTGCAACTCCGGTGGACCAGCTTCCGAGAATCGATGCTCAGCCTCAACAATCACAGCGCGTTCTTCACAAATACTCTTCTATTGGAATCGGAAACATGGATCACAAAGAGCTTGATCACTTTATGACGCATTATGTTAGTTTGCTGTGCGCATTTAAAGAACAGCTGCAACATGTTCATGTTCATGCCATGGAGGCAATGATGCCTTGCTGGGATCTTCAGCAATCTCTGCAAAGCTTGACAGGTGTATCTTCGGGTGAGGGAACGGGAGCAACAATGTCAGCCGATGAAGAGGAGCAGACAGAAAGCAATGCCAAGTTGTACAACGAAGGAAGCAGCCTTGATGGCATTGATACTCTTGACTTTGGTCCTCTTGTCCTCACTGAGACTGAAAGGTCTTTGATGGAGCGAATTAAGCTTGAACGCAAGCATCAGCTAGAACAGGGTTACAAGGAGAAAATTGTTGATGTAAGAGAAGAAATTGTAGGACTGAGAAGAACTGGGAAGGTCCCTGGACACATCACGTCACTTCTGAAAGCTTGGTGGCAATCACATTCTAAATGGCCCTATCCTACTGAGGAAGACAAAGCTAGACTGGTGCAAGAAACAGGCTTGCAATTAAAACAGATAAACAATTGGTTCATCAATCAAAGGAAAAGGAATGCTAGTAACTCCGAAACCGACTATGATAGGCACATGCTGTATGTTACGAGTCTCAATCCGTGGTCGTGGACAAAATCAGCAAGATTTCAAGAAATGACAAAAATGAAAAATCTTGAAATCTGTATACATTTTCACTCACACGACTCTTTTTATACAGATTTCAAGATTTTTCATTTTTGTCATTTCTTTTTCATTCTCATATGTGTTCTCTTTCATTTTCTAAAATGTGTATCATTTGTTTAA 1083 0.4174 MAFHDQNFIQLEPERREKSMDRNRSENNCETEELRENKAEILGHPLYGQLLSAHVSCLRIATPVDQLPRIDAQPQQSQRVLHKYSSIGIGNMDHKELDHFMTHYVSLLCAFKEQLQHVHVHAMEAMMPCWDLQQSLQSLTGVSSGEGTGATMSADEEEQTESNAKLYNEGSSLDGIDTLDFGPLVLTETERSLMERIKLERKHQLEQGYKEKIVDVREEIVGLRRTGKVPGHITSLLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNASNSETDYDRHMLYVTSLNPWSWTKSARFQEMTKMKNLEICIHFHSHDSFYTDFKIFHFCHFFFILICVLFHFLKCVSFV 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01411 360 Gene3D - 227 281 - -
Vivi1g01411 360 SMART KNOX2_2 86 141 IPR005541 GO:0003677|GO:0005634
Vivi1g01411 360 Pfam KNOX1 domain 38 78 IPR005540 GO:0003677|GO:0005634
Vivi1g01411 360 Pfam Homeobox KN domain 240 279 IPR008422 GO:0003677|GO:0006355
Vivi1g01411 360 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 64 281 - -
Vivi1g01411 360 Pfam KNOX2 domain 93 140 IPR005541 GO:0003677|GO:0005634
Vivi1g01411 360 CDD homeodomain 232 279 IPR001356 GO:0003677
Vivi1g01411 360 SMART HOX_1 223 287 IPR001356 GO:0003677
Vivi1g01411 360 ProSiteProfiles 'Homeobox' domain profile. 248 283 IPR001356 GO:0003677
Vivi1g01411 360 MobiDBLite consensus disorder prediction 141 157 - -
Vivi1g01411 360 MobiDBLite consensus disorder prediction 141 163 - -
Vivi1g01411 360 ProSiteProfiles ELK domain profile. 200 220 IPR005539 GO:0003677
Vivi1g01411 360 MobiDBLite consensus disorder prediction 1 31 - -
Vivi1g01411 360 SMART KNOX1_2 35 79 IPR005540 GO:0003677|GO:0005634
Vivi1g01411 360 MobiDBLite consensus disorder prediction 9 31 - -
Vivi1g01411 360 SUPERFAMILY Homeodomain-like 226 281 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01411 Vivi-Chr1 29409686 29415041 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01411 38 280 Homeobox Transcription Factor Family AT5G11060 75.000 1.34e-128 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Vivi1g01411 KNOX2 2.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01411 - - pcin:129320455 422.55