Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01409 ATGGCTTTTCACGACCATCTCCAACAGGAAATAGCGTTCCAGCGATTTACAGAAGAAGAAGACGAAGATAGAGTTCCATGGATGAACAACAGCGTGAACGCGCGTCAACAGAATTTCATGCACTTGGAGCCGGAGAGGAGAGAGAAAAGCATGGATCGGAATCGGAGCGAGAACAATTGCGAAACGGAGGAGTTGAGAGAACACAAAGCCGAGATATTAGGTCATCCGCTTTATGATCAGTTGTTATCGGCTCATGTTTCGTGTCTCCGAATTGCGACGCCGGTGGACCAGCTTCCGAGAATCGATGCGCAGCTTCAACAATCGCAACGTGTTCTTCAGAAATACTCTTCCATTGGAATCGGAAACATGGATCCCAAGGAACTTGATCACTTTATGACGCATTATGTTCTTTTGCTTTGCGCATTCAAAGAACAGCTGCAACAACATGTCCGTGTTCATGCCATGGAGGCGGTGATGGCTTGTTGGGATCTGGAGCAATCTCTGCAAAGCTTGACAGGTGTATCTTCGGGTGAAGGAACGGGAGCAACAATGTCAGATGATGAAGAGGAGCAGACAGAAAGTAATGCCAAGTTGTACAACGAAGGAAGCAGCCTTGATGGCATTGATACTCTTGGTTTTGGTCCTCTTGTCCCCACTGAGACTGAAAGGTCTTTGATGGAGCGTGTTAGGCTTGAACTCAAGCATGAGCTAAAACAGGGTTACAAGGAGAAAATTGTTGATGTAAGAGAGGAAATTCTACGAAAGAGAAGAGCTGGGAAGCTCCCTGGAGACACCACGTCGCTTCTGAAAGCTTGGTGGCAATCACATTCTAAATGGCCCTATCCAACTGAGGAAGACAAAGCTAGACTGGTGCAGGAAACAGGCTTGCAATTAAAACAGATAAACAATTGGTTCATCAATCAAAGGAAAAGGAATTGGCATGCTAACTCTCCATCTTCTAGTAACTCCAAAACCAAGCGCAAGAGTGCAGGTGATACCAGTAACCAGAGCTTCATGTGA 1020 0.4608 MAFHDHLQQEIAFQRFTEEEDEDRVPWMNNSVNARQQNFMHLEPERREKSMDRNRSENNCETEELREHKAEILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVLQKYSSIGIGNMDPKELDHFMTHYVLLLCAFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSSGEGTGATMSDDEEEQTESNAKLYNEGSSLDGIDTLGFGPLVPTETERSLMERVRLELKHELKQGYKEKIVDVREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANSPSSSNSKTKRKSAGDTSNQSFM 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01409 339 MobiDBLite consensus disorder prediction 312 339 - -
Vivi1g01409 339 FunFam homeobox protein knotted-1-like 3 isoform X1 253 314 - -
Vivi1g01409 339 Pfam KNOX2 domain 125 172 IPR005541 GO:0003677|GO:0005634
Vivi1g01409 339 Pfam Homeobox KN domain 272 311 IPR008422 GO:0003677|GO:0006355
Vivi1g01409 339 SMART ELK_2 232 253 IPR005539 GO:0003677
Vivi1g01409 339 Pfam ELK domain 232 253 IPR005539 GO:0003677
Vivi1g01409 339 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 81 323 - -
Vivi1g01409 339 Gene3D - 251 330 - -
Vivi1g01409 339 ProSiteProfiles ELK domain profile. 232 252 IPR005539 GO:0003677
Vivi1g01409 339 CDD homeodomain 255 314 IPR001356 GO:0003677
Vivi1g01409 339 MobiDBLite consensus disorder prediction 173 195 - -
Vivi1g01409 339 SMART KNOX1_2 66 110 IPR005540 GO:0003677|GO:0005634
Vivi1g01409 339 Coils Coil 51 71 - -
Vivi1g01409 339 SMART HOX_1 254 319 IPR001356 GO:0003677
Vivi1g01409 339 SMART KNOX2_2 117 173 IPR005541 GO:0003677|GO:0005634
Vivi1g01409 339 ProSiteProfiles 'Homeobox' domain profile. 252 315 IPR001356 GO:0003677
Vivi1g01409 339 SUPERFAMILY Homeodomain-like 254 319 IPR009057 -
Vivi1g01409 339 Pfam KNOX1 domain 69 109 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01409 Vivi-Chr1 29391819 29397004 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01409 68 336 Homeobox Transcription Factor Family AT5G11060 80.657 3.90e-159 449
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Vivi1g01409 KNOX2 4.4e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01409 - - gmx:100803673 562.377