Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01408 ATGGCTACCGTAAGAAATGATTTTGTTAAGGAAATCAATCCCTCTAAGGAATCTTGGGACGTTGTTGTTCAGGTGATTCGCTTATGGTTTGTACCAGATATGAACTCGAAAGAAAAGTTTTTTGCGATGGAGATGGTTCTAATGGATGAGAAGGGTGACAAGATTCAAGCTTCAGTTAGAAAAGCTCTGCTATCTCGATTTGAAAATAAGATACGTGAGGGAACGGTGTATAATTTCAAATCTTTTGGTGTCGCTGCTAATACCGGAGGATATAGGACCACAAAACATCAATTCAAGCTGAATTTGCAGAATGGCACGGTGGTTACAGAGGCTGGAGCTGGACATATAACAATGTCCCCTTACTCAATTGTATCTTTCCCAGAGATTGTTGGGAAAATAGACATGGACTACTTGATTGATGTTGTGGGAATTCTGGCTTCGGTTGGACGTGAAAGAGTCTATGAGAGGAATCGTGTAACTACTAAGTATAAGGTTATTGAGTTAGAGTCCAATGGTATGAAGCTTGAATGCACACTTTTTGGGCCATATGTTGCCGAGCTTGATGCATACCTCCAATCAGGCAACCCGGAAAATGTTGTTGTGCTTGCACAGTATTTGAAAGTCAAAATGTATAATGGAAAAATTCAGTTGCAGAATGCAATGAATTGTACCAAACTAATGTTCAACCCAGAAATTCCTGAAGCAAATAGTTTCAAACTCAACGATAACATTGGATCACCCACTCAACCATTCAGTTATATGAAGGATTCTTCTAATTTGAGTTTAGAAGAAGAGTTCTTAAATTTGAGTCAGCGGAAGACAATTGAGGAACTAAAAGACTGTCAAAATGAAATGGTTTGTGTTGTTTTAGGCACAATCAAACATGTTATTGGTGGGAATGATTGGTGGTATGCTGCACATGCCTGCAACAGGGGAGTTGTTGCAGATTCCAAAAGGTTATTCTGCCCTAAATGCAATAAGCATGTTTGGACCATTGTGCCAAGGTACCGTGTCAAACTTAGAGTGATTGATGAAACCGACTCTGCTACTTTCGTGCTTTTTGATCGTGATTGTTGTTTGCTGACAAATAAGACATGTTCTGATTTGATTGAGGAAATGGATCGTGAACTTGAGCCACCCATTGTGCCTAAAGTCATTGGTGATTTGGTTGAACAAACTTTTCTTTTTAAGATAGATGTAAAGAATGATGTGAATTCAAACTTTGAGCAGTCATTTCGCGTCAAAAAAGTTTGTGCCGACTAA 1263 0.3895 MATVRNDFVKEINPSKESWDVVVQVIRLWFVPDMNSKEKFFAMEMVLMDEKGDKIQASVRKALLSRFENKIREGTVYNFKSFGVAANTGGYRTTKHQFKLNLQNGTVVTEAGAGHITMSPYSIVSFPEIVGKIDMDYLIDVVGILASVGRERVYERNRVTTKYKVIELESNGMKLECTLFGPYVAELDAYLQSGNPENVVVLAQYLKVKMYNGKIQLQNAMNCTKLMFNPEIPEANSFKLNDNIGSPTQPFSYMKDSSNLSLEEEFLNLSQRKTIEELKDCQNEMVCVVLGTIKHVIGGNDWWYAAHACNRGVVADSKRLFCPKCNKHVWTIVPRYRVKLRVIDETDSATFVLFDRDCCLLTNKTCSDLIEEMDRELEPPIVPKVIGDLVEQTFLFKIDVKNDVNSNFEQSFRVKKVCAD 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01408 420 Pfam Domain of unknown function DUF223 44 131 IPR003871 -
Vivi1g01408 420 CDD RPA1_DBD_A_like 21 108 - -
Vivi1g01408 420 CDD RPA1_DBD_B_like 140 239 - -
Vivi1g01408 420 CDD RPA1_DBD_C 273 417 IPR047192 -
Vivi1g01408 420 Gene3D - 116 245 IPR012340 -
Vivi1g01408 420 SUPERFAMILY Nucleic acid-binding proteins 121 239 IPR012340 -
Vivi1g01408 420 Gene3D - 8 111 IPR012340 -
Vivi1g01408 420 Pfam Replication factor-A C terminal domain 291 406 IPR013955 -
Vivi1g01408 420 Gene3D - 258 419 IPR012340 -
Vivi1g01408 420 SUPERFAMILY Nucleic acid-binding proteins 9 110 IPR012340 -
Vivi1g01408 420 SUPERFAMILY Nucleic acid-binding proteins 271 416 IPR012340 -
Vivi1g01408 420 PANTHER OS03G0429900 PROTEIN 8 404 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01408 Vivi-Chr1 29368696 29371605 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01408 12 418 Core DNA Replication Machinery Family AT5G08020 21.749 1.33e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01408 - - vvo:131625632 526.554