Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01396 ATGTTTCCCACCATTTTTGCTTTCTTCTCTGTCTTCCTATCTCTGACTTCTCACTCTTTTGCTGCCGACACCACTTCTTGGGTGAAAGCTGGTTATTACTATTCCGGCAATGAAATTTCAGCTTCAGAAATTAAATCAACACTTTTCACTCACATCTTATGTGCTTTTGCTTTTATAAACTCCACAAACTATAACATCTTTATAAACTCTTCTGAACAACACAAGTTCTCTACCTTCACCAACACAGTAAAGCTCCAAAACCCATCTCTTATAACTCTTCTATCAATCTATGGTGGAAGAGAAAGCCCTTCAGTTTTCGACTCAATGATAAACCAGTCTTCTTACAGAAAATCTTTCATTGATTCTTCCATCAAAACAGCAAGAAAATATGAGTTTCAAGGCATAGATCTTAGTGGAGTCTCACCAAAGCAAGGACAAGAGCTTACAAATTTAGCAACCCTTTTGAAAGAGTGGCGAATCGCGGTAACTTCTGAGGCAAGAAACACTAAAAAGACAGAATTAGTGTTGGTGATGGCAGGTTTTCATGCAGCTTTATATGGTTCATCTGGTTGGGAAAACACTGATTCTGGTATCAAAGAGTGGAGAAAGAGAGGATTTTCTTCTAACAAGCTTGTAATTGGTTTACCTTATCATGGATATGCATGGACACTTGTGAAAAAAGATGAAGATGGTGTTGGAAAACCAGCTTCTGGTCCTGCTATTACTATGGATGGTTCTATGGCTTATAAGTTGATAAAAAGTTACATTAGAAGCTTTGGAGAAGGAGTAGTTTCAAGTTATAATGATACTTTTGTGGTGAATTATTTCACTGTTGCTTCAACTACTTGGGTTAATTTTGATGATGTTGAAGTTATTAAAGAAAAAGTATCTTATGCAAAGAAAAATGGATTACTTGGTTACAATGTTTTCCAAGTTGGGAATGATGACAACTGGGTCCTTTCAAAGGCAGCTCAAGAAGTAGATGAAGATCATCATAACAGAAGCTTGCTGATAATTGTTCTGCTTACAACTTTGACTGCTGCACTTCTCTTGGGAACAGTATTTTGCTACTACTACCAAGGAACAGTGACGATTCTTACAAGAATGATATACAAACTGAGGATATGTTTTTCAGAAGCTGAAGAAGATCTTAATGGAAATGCTTCTGATTTGATAGTATTTGGATATCTCACAATTAAAGTAGCAACAGATAACTTCTCAAAAGAAAATAAGCTTGGACAAGGTGGATTTGGTGCAGTGTATAAGGGAAAATTACGAAAGGGACAAGAAATAGCTGTCAAAAGACTCTCAGAAAACTCGAATCAAGGACTTGAAGAGTTCAAAAATGAGATCACACTCACAGCAAGATTACAGCATGTGAATTTAGTTAGACTTTTGGGTTATTGCACAAAAAGGAATGAGAAGCTTCTCATCTATGAATACCTCCCAAATAAAAGCTTAGATCATTTTCTCTTTGATCCAAGGAAATCGGTTCTTCTAGATTGGAGGAAGCGTGTGAATATCATTGAAGGAATTACTCAAGGCCTTCTTTATCTCCAAGAGTACTCAAATTTTACTATAATCCACCGAGATCTTAAAGCTAGTAATGTTTTGTTAGACCATGAGATGAATCCCAAGATATCAGATTTTGGTATGGCTAGAATTTTCGGGAAGTATGAACATGAAGCAAACACAAGTAGGATTGTTGGAACATATGGGTATGTACCTCCTGAGTATGTGAGAAAAGGCATATACTCACCCAAATACGATGCTTATAGTTTTGGAGTTCTTCTCTTGCAAATCATCAGTGGAAAGAGGACTTCACAATATTACGGACCACATGAAAATATGAACCTTTTGGAATATGCATATGAGCTATGGATGGAAGGAAGAGGTGTGGAGTTTTTGGACCCTTCATTGGATGATTCAACATCTCATTGTAAAATCATGAGATGCATGCAGGTAGCTCTTTTGTGTGTTCAAGAGAACTCAGCAGATAGACCTTCCATGCTAGAAGTTGATACACTGCTCAAGAGTGAAAGTACACCTGTTGGTACTCCTAACATGCCCGCCTTTTCGATGAAAAAATCCAAAGATGACAAGGGAGATACATCTAACTCGGGGTTGAAATTTTCTTCAATCAATGATGTTACAATTTCTCAGATGTTACCAAGATAA 2178 0.3691 MFPTIFAFFSVFLSLTSHSFAADTTSWVKAGYYYSGNEISASEIKSTLFTHILCAFAFINSTNYNIFINSSEQHKFSTFTNTVKLQNPSLITLLSIYGGRESPSVFDSMINQSSYRKSFIDSSIKTARKYEFQGIDLSGVSPKQGQELTNLATLLKEWRIAVTSEARNTKKTELVLVMAGFHAALYGSSGWENTDSGIKEWRKRGFSSNKLVIGLPYHGYAWTLVKKDEDGVGKPASGPAITMDGSMAYKLIKSYIRSFGEGVVSSYNDTFVVNYFTVASTTWVNFDDVEVIKEKVSYAKKNGLLGYNVFQVGNDDNWVLSKAAQEVDEDHHNRSLLIIVLLTTLTAALLLGTVFCYYYQGTVTILTRMIYKLRICFSEAEEDLNGNASDLIVFGYLTIKVATDNFSKENKLGQGGFGAVYKGKLRKGQEIAVKRLSENSNQGLEEFKNEITLTARLQHVNLVRLLGYCTKRNEKLLIYEYLPNKSLDHFLFDPRKSVLLDWRKRVNIIEGITQGLLYLQEYSNFTIIHRDLKASNVLLDHEMNPKISDFGMARIFGKYEHEANTSRIVGTYGYVPPEYVRKGIYSPKYDAYSFGVLLLQIISGKRTSQYYGPHENMNLLEYAYELWMEGRGVEFLDPSLDDSTSHCKIMRCMQVALLCVQENSADRPSMLEVDTLLKSESTPVGTPNMPAFSMKKSKDDKGDTSNSGLKFSSINDVTISQMLPR 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01396 725 ProSitePatterns Protein kinases ATP-binding region signature. 412 434 IPR017441 GO:0005524
Vivi1g01396 725 FunFam Uncharacterized protein 482 687 - -
Vivi1g01396 725 Gene3D Transferase(Phosphotransferase) domain 1 482 685 - -
Vivi1g01396 725 SUPERFAMILY (Trans)glycosidases 28 327 IPR017853 -
Vivi1g01396 725 CDD STKc_IRAK 412 678 - -
Vivi1g01396 725 MobiDBLite consensus disorder prediction 678 711 - -
Vivi1g01396 725 SMART 2g34 27 315 IPR011583 GO:0008061
Vivi1g01396 725 Gene3D Phosphorylase Kinase; domain 1 380 481 - -
Vivi1g01396 725 ProSiteProfiles Protein kinase domain profile. 406 692 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g01396 725 Pfam Glycosyl hydrolases family 18 32 179 IPR001223 GO:0005975
Vivi1g01396 725 Pfam Protein kinase domain 406 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g01396 725 Gene3D Glycosidases 180 317 - -
Vivi1g01396 725 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 27 331 IPR001223 GO:0005975
Vivi1g01396 725 Gene3D Glycosidases 24 179 - -
Vivi1g01396 725 SMART serkin_6 406 682 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g01396 725 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 86 721 - -
Vivi1g01396 725 ProSitePatterns Serine/Threonine protein kinases active-site signature. 527 539 IPR008271 GO:0004672|GO:0006468
Vivi1g01396 725 Gene3D - 217 286 IPR029070 -
Vivi1g01396 725 SUPERFAMILY Protein kinase-like (PK-like) 390 689 IPR011009 -
Vivi1g01396 725 FunFam Uncharacterized protein 381 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01396 Vivi-Chr1 29078858 29082218 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01396 394 725 Receptor kinase-like Gene Family AT4G11530 51.170 2.37e-116 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi1g01396 Pkinase 1.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01396 - - tpra:123922687 1216.06