Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01390 ATGTCGTCTGATAATCTTTTTGAAGACCTCAAGAAAGAGAATGTTGATCTCGAAAATATTCCTATTGAGGAAGTTTTCAAGCAGCTAAAATGTAGCAAAGAAGGTCTAACATCAGCTGAGGGAGAGAGTAGGCTAGTGATATTTGGTCCTAATAAATTAGAAGAGAAAACAGAAAGCAAGTTCCTTAAGTTCTTGGGTTTCATGTGGAATCCGTTATCATGGGTTATGGAGGTTGCTGCTCTTATGGCCATTGGATTGGCCAATGGAGGGGGCAAGCCAGCGGATTGGCAAGATTTCGTTGGTATTGTTGTGTTGCTTATCATCAACTCAACCATTAGTTTCATTGAAGAAAACAATGCAGGTAACGCCGCAGCAGCTTTGATGGCCGGTCTTGCACCTAAAACCAAGGTGTTGAGGGATGGAAAATGGACTGAGCAAGAGGCGGCGATTTTGGTGCCAGGAGATTTGGTGAGCATCAAGTTGGGAGATATTGTTCCGGCTGATGCTCGTCTCTTGGAAGGAGATGCTCTTAAGATTGACCAATCTGCACTTACTGGTGAGTCACTTCCGGTTACCAAGAACCCTGGTGATGAAGTCTTCTCTGGTTCAACCTGCAAACAAGGTGAGATTGAGGCTATTGTCATTGCCACTGGTGTCCATACTTTCTTCGGAAAGGCTGCTCACCTTGTGGATAGCACCAACAATGTTGGTCACTTCCAAAAGGTGTTGACATCGATCGGAAACTTCTGTATCTGCTCCATTGCAATAGGAATGTTGATTGAGATTATTGTGATGTACCCCATTCAAGAAAGGCCATATAGAGAAGGTATTGACAATTTGTTGGTTCTTCTCATCGGAGGTATCCCAATCGCCATGCCAACGGTTTTGTCCGTGACAATGGCTATTGGCTCTCACCGTTTGTCTCAGCAAGGAGCTATTACCAAGAGGATGACAGCTATTGAAGAAATGGCTGGGATGGATGTTCTCTGCAGTGACAAGACCGGAACTCTCACACTTAACAAACTCTCTGTTGACAAAAACTTGATTGAGGTGTTTGTTAATGGCGTAGACAAGGACGGTCTTCTCTTGGCTGCTGCCAGGGCTTCTAGGGTTGAAAACCAAGATGCCATTGATGCTTCAATCGTTAATATGTTGGGTGATCCCAAGGAGGCAAGAGCCGGAATCACTGAGGTGCATTTCTTGCCCTTCAATCCAGTCGGTAAACGCACTGCTATTACATACGTTGATGGCGAGGGAAATTGGCATAGATGCAGCAAGGGTGCTCCTGAACAAATTATTGAGCTTTGTGAACTCAAGGGAGAGACTTTGAAAAAGGCCCACAAAATCATTGATCAGTTTGCTGAACGAGGTCTGCGTTCATTGGCTGTTTCTCGCCAGACTGTTTCAGAAAAGACCAAGGAGAGTGAAGGAGATGCATGGGAGTTTTTGGGTCTCATGCCACTCTTTGACCCTCCTAGACACGACAGTGCCGAGACTATTCGACGTGCTCTTGACCTCGGAGTTAATGTTAAGATGATCACTGGTGACCAACTTGCCATTGGAAAAGAAACCGGTCGCAGACTCGGAATGGGAACCAACATGTATCCTTCATCATCCCTTCTTGGTGATAACAAGGACCCCGCCATTGCATCAATCCCAATTGACGATCTCATTGAGAAGGCTGATGGATTTGCCGGAGTCTTCCCTGAACACAAGTACGAGATTGTGAAGAGGCTGCAAGATAGAAAACACATCTGCGGTATGACTGGTGATGGTGTGAACGACGCACCCGCATTGAAGAAAGCAGACATCGGTATCGCTGTTGCTGATGCAACTGATGCTGCAAGGAGTGCTTCCGACATTGTTTTGACAGAGCCAGGACTAAGTGTGATTGTGAGTGCTGTGTTAACTAGCAGAGCCATCTTCCAAAGAATGAAAAACTACACAATCTACGCTGTTTCTATCACCATCCGTATCGTGTTTGGATTCATGCTTGTTGCTTTGATCTGGAAGTTTGATTTCTCACCCTTCATGGTCCTCATCATTGCCATCTTGAATGACGGAACCATCATGACCATCTCTAAGGATAGAGTGAAGCCATCACCAGTGCCCGACTCATGGAAACTCAAAGAAATCTTTGCTACCGGAATTGTTCTTGGATCTTACATGGCCATCATCACTGTTGTGTTCTTCTATTTAGTTCATGACACCGATTTCTTTACCGTAAGTAATTCTACCAGTTCCAAATTCAATAATGTCGTTTTAGCATATAAAAATTGTTTCAATGTTTCATCTCGTTTTTTGTTTCAGAGAGTTTTCGGTGTGAAGCCAATCGGAGACAGTAACGGTCATCTTAACTCAGCTCTCTACCTTCAAGTCAGTATTATCAGTCAAGCACTCATCTTCGTGACAAGGTCAAGGAGTTGGTCTTACGTCGAACGCCCCGGCTTTTTGCTTCTCGCAGCCTTCTTTGCTGCACAACTGGTGGCCACTGTCATTGCTGTCTATGCACATTGGGGATTTGCAAGAATCAATGGCATTGGTTGGGGATGGGCAGGAGCTATCTGGATCTTCAGCATTGTTACTTACATTCCTCTCGACATCCTTAAATTCATGATCCGATTAGGATTGTCCGGAAGGGCATGGGACAACATGCTCGACAATAAGACCGCATTCACAACCAAGAAGGACTACGGAAAAGGCGAGAGGGAAGCTCAATGGGCACTGGCACAACGCACGCTCCACGGTCTTAAAGTTCCAGAATCACATATGAACAACAACAATCACCATGAACAATCATCTGATATGGCAGAACAAGCCAAGAGACGCGCCGAGGCTGCTAGGCTGAAAGAGCTTCATACACTCAAGGGACATGTTGAGTCTGTGGTGAAGTTGAAGGGTCTTGACATTGATACCATTCAACAACATTACACACTCTAA 2940 0.4507 MSSDNLFEDLKKENVDLENIPIEEVFKQLKCSKEGLTSAEGESRLVIFGPNKLEEKTESKFLKFLGFMWNPLSWVMEVAALMAIGLANGGGKPADWQDFVGIVVLLIINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWTEQEAAILVPGDLVSIKLGDIVPADARLLEGDALKIDQSALTGESLPVTKNPGDEVFSGSTCKQGEIEAIVIATGVHTFFGKAAHLVDSTNNVGHFQKVLTSIGNFCICSIAIGMLIEIIVMYPIQERPYREGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLIEVFVNGVDKDGLLLAAARASRVENQDAIDASIVNMLGDPKEARAGITEVHFLPFNPVGKRTAITYVDGEGNWHRCSKGAPEQIIELCELKGETLKKAHKIIDQFAERGLRSLAVSRQTVSEKTKESEGDAWEFLGLMPLFDPPRHDSAETIRRALDLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGDNKDPAIASIPIDDLIEKADGFAGVFPEHKYEIVKRLQDRKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMLVALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPVPDSWKLKEIFATGIVLGSYMAIITVVFFYLVHDTDFFTVSNSTSSKFNNVVLAYKNCFNVSSRFLFQRVFGVKPIGDSNGHLNSALYLQVSIISQALIFVTRSRSWSYVERPGFLLLAAFFAAQLVATVIAVYAHWGFARINGIGWGWAGAIWIFSIVTYIPLDILKFMIRLGLSGRAWDNMLDNKTAFTTKKDYGKGEREAQWALAQRTLHGLKVPESHMNNNNHHEQSSDMAEQAKRRAEAARLKELHTLKGHVESVVKLKGLDIDTIQQHYTL 979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01390 979 Gene3D - 327 626 IPR023214 -
Vivi1g01390 979 Gene3D - 133 217 - -
Vivi1g01390 979 PRINTS H+-transporting ATPase (proton pump) signature 446 464 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vivi1g01390 979 PRINTS H+-transporting ATPase (proton pump) signature 620 645 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vivi1g01390 979 PRINTS H+-transporting ATPase (proton pump) signature 589 605 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vivi1g01390 979 PRINTS H+-transporting ATPase (proton pump) signature 790 811 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vivi1g01390 979 PRINTS H+-transporting ATPase (proton pump) signature 561 577 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vivi1g01390 979 NCBIfam HAD-IC family P-type ATPase 102 348 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vivi1g01390 979 NCBIfam HAD-IC family P-type ATPase 564 675 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vivi1g01390 979 FunFam Plasma membrane ATPase 482 637 - -
Vivi1g01390 979 ProSitePatterns E1-E2 ATPases phosphorylation site. 332 338 IPR018303 -
Vivi1g01390 979 Pfam haloacid dehalogenase-like hydrolase 326 603 - -
Vivi1g01390 979 PRINTS P-type cation-transporting ATPase superfamily signature 589 608 - -
Vivi1g01390 979 PRINTS P-type cation-transporting ATPase superfamily signature 330 344 - -
Vivi1g01390 979 PRINTS P-type cation-transporting ATPase superfamily signature 612 624 - -
Vivi1g01390 979 PRINTS P-type cation-transporting ATPase superfamily signature 484 495 - -
Vivi1g01390 979 PRINTS P-type cation-transporting ATPase superfamily signature 506 516 - -
Vivi1g01390 979 PRINTS P-type cation-transporting ATPase superfamily signature 180 194 - -
Vivi1g01390 979 Pfam E1-E2 ATPase 132 309 - -
Vivi1g01390 979 NCBIfam plasma-membrane proton-efflux P-type ATPase 35 836 IPR006534 GO:0008553|GO:0016020|GO:0120029
Vivi1g01390 979 PANTHER CALCIUM-TRANSPORTING ATPASE 18 913 - -
Vivi1g01390 979 FunFam Plasma membrane ATPase 133 217 - -
Vivi1g01390 979 SUPERFAMILY Calcium ATPase, transduction domain A 133 230 IPR008250 -
Vivi1g01390 979 SFLD p-type atpase 312 641 IPR044492 -
Vivi1g01390 979 Gene3D - 342 489 IPR023299 GO:0000166
Vivi1g01390 979 SUPERFAMILY Calcium ATPase, transmembrane domain M 15 875 IPR023298 -
Vivi1g01390 979 Coils Coil 930 950 - -
Vivi1g01390 979 SUPERFAMILY HAD-like 326 636 IPR036412 -
Vivi1g01390 979 Pfam Cation transporter/ATPase, N-terminus 19 82 IPR004014 -
Vivi1g01390 979 Gene3D - 928 979 - -
Vivi1g01390 979 MobiDBLite consensus disorder prediction 921 943 - -
Vivi1g01390 979 SFLD Haloacid Dehalogenase 312 641 - -
Vivi1g01390 979 CDD P-type_ATPase_H 35 871 IPR006534 GO:0008553|GO:0016020|GO:0120029
Vivi1g01390 979 SMART Cation_ATPase_N_a_2 16 88 IPR004014 -
Vivi1g01390 979 Gene3D - 95 745 - -
Vivi1g01390 979 FunFam Plasma membrane ATPase 342 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01390 Vivi-Chr1 28986397 28990901 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01390 1 979 Primary Pumps ATPases AT3G42640 81.614 0.0 1614
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01390 K01535 - gmx:100798717 1632.85