Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01388 ATGTCTGGTCATGATGTCGAGAAAATTCAAGAGCTTCAGTTATTCACAACACCGCAATCGCAAACCCAAACACAAAATATTAATACCACCATAGACAACAACAACCCTGAATCACCTTCCACTGTTGTCCGCCGCCCCCGAGGTCGTCCAGTTGGCTCTAAGAATAAGCCCAAGACGCCTATCATAGTTACATGTGAAAACCCTAATGCCCTATGTCCTCATGTGCTTGAGATCACTGATGGAGCTGACGTGTTAAAAAGTCTCTTTGATTACGCTCGCCGTCAACTGAGGGGGGTCTCCGTCCTCAATGGAAATGGAGTGGTGACGCATGCTAGGCTTCGTCAACCCACGGGAAGAGTCATAACCCTTCAAGGAAATTTTGAGATTCTTTCCATATCTGGGACAATTTTTCCGCCCCAACACCTGAGATGGTTGGAGGATTAA 444 0.4662 MSGHDVEKIQELQLFTTPQSQTQTQNINTTIDNNNPESPSTVVRRPRGRPVGSKNKPKTPIIVTCENPNALCPHVLEITDGADVLKSLFDYARRQLRGVSVLNGNGVVTHARLRQPTGRVITLQGNFEILSISGTIFPPQHLRWLED 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01388 147 CDD DUF296 73 139 IPR005175 -
Vivi1g01388 147 Pfam Plants and Prokaryotes Conserved (PCC) domain 73 142 IPR005175 -
Vivi1g01388 147 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 20 140 IPR014476 GO:0003680
Vivi1g01388 147 MobiDBLite consensus disorder prediction 16 59 - -
Vivi1g01388 147 SUPERFAMILY AF0104/ALDC/Ptd012-like 69 139 - -
Vivi1g01388 147 ProSiteProfiles PPC domain profile profile. 68 147 IPR005175 -
Vivi1g01388 147 MobiDBLite consensus disorder prediction 16 41 - -
Vivi1g01388 147 Gene3D - 73 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01388 Vivi-Chr1 28982273 28982716 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01388 42 139 AT-hook Motif Nuclear Localized (AHL) Family AT2G35270 58.000 1.96e-34 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01388 - - vvo:131601495 275.404