Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01378 ATGCCGGACGGAGATTCCTCCACCGCCAGTACCGTTAAACTTCCGATGGAGACCTCGGGAGACCTATTCGATCATGGACAGTACCTGAATCTTACCCTAGTCAACAATCGTGACGGCAAAGTCAAAAAGGATCCTACGAAAATTGCACGAGAGTATCAATTGGAGTTATGCAAAATTGCTATGGAGGAAAATGTGATCGTTTATTTGGGAACAGGATGTGGGAAGACGCACATTGCTGTGTTGCTCATGCATGAAATGAGGCATTTGATCAAGAAGCCGAGCAAGGACGTGTGTGTTTTTCTCGCTCCTACTGTTGCTCTAGTTCATCAGCAAGCAAAGGTTATATCTGACTCTACTGATTTTGAAGTTGGAACTTACTGTGGGAGTTCCAAGCGCTCGAAATCGCATCAGCATTGGGATGAGGAGATTGAACAGTATGAGGTTCTTGTTATGACCCCGCAAATATTACTTCACAACTTATCTCATTGTTTCATGAAGATGGAGATGATTGCACTTTTAATATTTGACGAATGCCATCATGCTCAAGTCAAAAGCAGCCATCCTTATGCTGAAATTATGAAAGTCTTTTACAAAAATAATTCCACAAAGGTTCCCCGTATATTTGGCATGACTGCATCTCCTGTTGTAGGAAAAGGCGGTTCTTCTGCAGCAAATCTACCGAAAAGCATCAATAGTCTCGAACAAATGCTTAATGCTAAGGTATACTCAGTTGAAGACACTGCATTGGAATCTTTTGTTACCACTCCTGCAGTTCAGATATATCACTATAGTTCGACTGCAAATATGGAAACTAGCTTGTACTGGAAAATTGAAGAGATTAAATGCCAGCAGTGCATAGAAACCCTTGGTAGGAGCATAGAAGATCACCAGAAACGAATGAGCACAAAGAAACTTCTCAATCGGGTGCACGATAATGTGGTCTTCTGTCTCAAGAGTCTTGGCATTTGGGGAGCGTTGCAGGCTAGTCGTATTCTTTTGAGCGGTGATCTTTCTGAGAGGCAAGCATTAGTTGAGGCAGAAGGAATTTCAAGTGACGAGTCTGTATGTGATAAATATCTTGCAAAGACAGCTGAACTACTTACTTCCAAATGCATGACAGGTGACAATGTTTCTGATCCATCTTCCTTGGAAATATTAAAGGAGCCTTTTTTCTCAGCAAAGCTCTTACGCCTCATTGGGATACTGACTAGTTTTAGGTTGCAACAGAACAGGAAATGTATAATTTTTGTGAATAGAATTGTGACTGCAAGATCCCTGTCATACATACTACAGAAGCTCAAGCTTCTAAGTCAATGGAAAAATGATTTTCTTGTAGGAGTCCATGCGGGAGTGAAGAGTATGTCACGGAAGACCATGAACACAATTGTTGAAAAGTTTCGCTCAGGAGAGTTGAATCTATTGGTTGCCACCAAAGTGGGTGAAGAAGGGCTTGATATTCAAACATGTTGCCTTGTCATACGGTTTGATCTACCCGAAACCGTTGCCAGTTTTATACAGTCAAGAGGCCGTGCCCGTATGCCTCGTTCAGAATATGCATTTTTGGTCGACAGCGGCAATGAGAAGGAATTAGCCATAATTGATGGTTTTGAGAAAGATGAACTTCGAATGAATACGGAGATTGCTGTCCGAACATCCAGTGAGACACACAACATCCCCGTGGAAAAGATTTTCAGAGTTGATTCATCTGGTGCCTCAGTCAGTGCGGGATACAGTATCTCGTTGCTACACCAGTATTGTTCAAAGCTTCCGCATGATGAGTACTTTGATCCCAAGCCAAGTTTCTTTTACTTCGATGATTCAGGGGGAACTGTCTGCCAGATAACTTTGCCTTCCAATGCTCCAATACACCAAATTGTCAGTGCACCATATTTGTCTATGGAGGCTTCGAAAAGAGACGCATGTCTGAAAGCAATTGAAGAACTGTATAAATTAGGTTCTTTAAATGACTGTCTCTTGCCAAAGCAAAATGATGCAGAGCCAGAGGTTTTGGACTCTTCTGATTCAGATGACTGTGAAGATAATATTTCAAGAGGAGAACTGTATGAGATGCTAGTTCCTTCTGCCTTTAGACAGTCATGGAAAAATACGGAGAGAACTGTCCGTCTCAACTCTTACTACATTAAATTTTGCCCCACTCCGGAGGATCGGGTCTATAAAAAATTTGGCTTGTTCATCATGACTCGTCTTCCACTGGAGGCAGAGAAACTGGAACTTGATCTTCATCTAGCTCACAGTAGATCTGTGATGACAAAATTTATTCCATTTGGAGTTGTAGAATTCAACAATGATGAGATTAAGATGGCGGAGAATTTTCAAGAAATGTTCCTCAAAGTTATTCTTGATAGATTAGAATTTGTTTCTAAGTTTGTAGAATTGGGTGCTGAATCTCACACCCGCACATCGACCTTCTACCTTTTGCTTCCAGTCATATTGAAAGAATATAATGATGTGATGAAAGTAGATTGGAAGACAGTAAAGAGATGCCTTTGTTCACCAATCTTCAGGCATCCAGATGATACATTCGATAAAAAGGTTACCCCTTTTGATAATCATCTGCATCTTGCCAATGGTTACAGAAGTGTTGGAGATGTTGAGAATAGTTTAGTGTATACTCCACACACGGATAACTTCTTTTTTATCACAAACGTTATTTATGAAAAGAATGGATTCAGCCCTTTCAAAGATTCAGACACTTCAAGCTACGTGGACCACTTACATGAAAAGTTTTCCATTACTCTCAAACACCCCGAACAACCACTTCTACATGCAAAACCACTCTTCAAATTCCACAACCTGCTACACAATCGAAAGCATGGCGATGCGGAACCACATGAGCTAGAGGAATACTTTGTCTATTTGCCTCCTGAGCTATGCGAGCTGAAAATAGTTGGCTTTTCCAAGGATATTGGTAGTTCAATATCTTTGCTACCTTCAATTATGCATCGTCTTGGAAACTTGCTGGTTGCCATTGAACTGAAGCACCACCTACATTCCTCCTTCCCAGAGGCAGCTGAAATTAGTGCCCTTAGAGTTCTAGAGGCTCTCACCACCGAAAAGTGTCAGGAGCGTCTTTCCCTTGAAAGACTTGAAGTGCTTGGTGATGCTTTCCTTAAATTTGCTGTTGGACGTCATTTTTTTCTCTTGCATGACAGCTTTCATGAAGGAGACCTTACCAGCAAGCGTTCCAATGTTGTAAATAACTCCAATTTGTTTAAGTTGGCTATTAGGCGCAATTTGCAGGTTTATATATTTGATCAGGCATTTGATCCCTTCCAGTTCTATGCATTAGGCCGTCCTTGTCCAAGAGTTTGTACCGAGGAAACTGAAGACAGCATACACTTATGTTTAAATTCTGGTGAGGAGAAAAGAAGTGTAAGTGGAATCCGATGTAATAAAAATCACCATTGGTTGCATAGGAAAACAATTGCTGATGCGGTTGAAGCTCTGGTGGGGGCATTCATAGTTGACAGTGGTTTTAAAGCTGCATTTGCCTTTCTTACATGGATTGGCATACAAGTAAATTTTGAAGCCTCACAAGTTGTTAATATTTGCACCGGAAGTGTTGACTATTTTCCTCTTTCTGCTGAAGTAGACATTCCTTCCCTTGAAAGTAAGTTAGGACATCACTTTGTTCATAAGGGTTTGCTTCTCCAGGCTTTTGTACATCCTTCCTATAATAAGCATGGAGGAGGTTGTTATCAGAGATTGGAGTTTCTTGGAGATGCTGTGTTGGATTATTTGATTACGTCATATCTATACTCAGCTTATCCCAAACTAAAGCCTGGCCAACTGACGGATCTGAGAGCGTTGTCTGTCAATAATAAGGCATTTGCCTGTGTGGCAGTTGATCGCTGTTTTGATGAATTTCTTTTATGTGATTCAAATGCTCTGACCCAGGCAATAAAAAAGTACGCTGACTGTATTAGAAGACCTATACCGGACTGTGGCAATAATGGAGGGCCAAAAAGTCCTAAGGCCCTAGGTGATTTGGTTGAATCTTGTATTGGTGCTGTTCTTCTTGATTCAGGATTTGATTTGAACAAAGTTTGGAAGATTATGACTTCGTTCTTGGACCCAATCATGAAATTCTCATCAAGTTTGCAGCTTAGTCCTGTTAGAGATTTGCAAGAACTTTGCCAATTTAATAATTTGGAGTTGCAGCTTCTGCCATCAAAATTCGCCAAGACTTTTTCAGTTGAAGCAAAAGTGATTGGAGACGGTGTAAGTGAAAAAGTTTATGCGACCAGCCAAAATAAAAAAGAAGCTTCTAGAATTGCTTCACAGCTACTATTTTCAAAGTTGAAGGCTCAAGGCTTCAAACTGAAGTCAAAAACTTTGGAAGATGTTATGAAATCAACATTTAAGACGGAACCAGAACTCATTGGCTATGATGAAACTCCCATTGATGTAACAGATACTACCACCATCGGACAAGTAATGGTTAATGGAGACCTATGTAACAAGGTTAACCCTGAAATCCGCCCTATCCAGGAGGTATCTGATGCATCGTCCTCGAATGTGAAACCTGTTGTCCAACGGCTTCAATCTTCTCTTAAGGGAAAGCCTAGCGAAACCATTCGAAATCGTGTTTGTGTCAGTGACTCATCAAAGACAGCAAAAGCACGATTGTATGAATTATGTGCATCCTATTGCTGGAAAGCTCCTTCATTTGAATGCTGCAAGGAAGAGGGACCAGACCACCTTAAGTTATTCACTTGCAAAGCGACGATGAAGATAGAAGAGGCCCCAGATACAGTTTTTGAGTTTATTGGGGAACCCTTGCCAAAGAAGAAAGATGCAGCAGATAGTGCAGCTGAGGGTGCATTATGGTATCTGCAAAAGGAAGGTTATCTGCATAATGCTAATGGTAATTGA 4896 0.4095 MPDGDSSTASTVKLPMETSGDLFDHGQYLNLTLVNNRDGKVKKDPTKIAREYQLELCKIAMEENVIVYLGTGCGKTHIAVLLMHEMRHLIKKPSKDVCVFLAPTVALVHQQAKVISDSTDFEVGTYCGSSKRSKSHQHWDEEIEQYEVLVMTPQILLHNLSHCFMKMEMIALLIFDECHHAQVKSSHPYAEIMKVFYKNNSTKVPRIFGMTASPVVGKGGSSAANLPKSINSLEQMLNAKVYSVEDTALESFVTTPAVQIYHYSSTANMETSLYWKIEEIKCQQCIETLGRSIEDHQKRMSTKKLLNRVHDNVVFCLKSLGIWGALQASRILLSGDLSERQALVEAEGISSDESVCDKYLAKTAELLTSKCMTGDNVSDPSSLEILKEPFFSAKLLRLIGILTSFRLQQNRKCIIFVNRIVTARSLSYILQKLKLLSQWKNDFLVGVHAGVKSMSRKTMNTIVEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPRSEYAFLVDSGNEKELAIIDGFEKDELRMNTEIAVRTSSETHNIPVEKIFRVDSSGASVSAGYSISLLHQYCSKLPHDEYFDPKPSFFYFDDSGGTVCQITLPSNAPIHQIVSAPYLSMEASKRDACLKAIEELYKLGSLNDCLLPKQNDAEPEVLDSSDSDDCEDNISRGELYEMLVPSAFRQSWKNTERTVRLNSYYIKFCPTPEDRVYKKFGLFIMTRLPLEAEKLELDLHLAHSRSVMTKFIPFGVVEFNNDEIKMAENFQEMFLKVILDRLEFVSKFVELGAESHTRTSTFYLLLPVILKEYNDVMKVDWKTVKRCLCSPIFRHPDDTFDKKVTPFDNHLHLANGYRSVGDVENSLVYTPHTDNFFFITNVIYEKNGFSPFKDSDTSSYVDHLHEKFSITLKHPEQPLLHAKPLFKFHNLLHNRKHGDAEPHELEEYFVYLPPELCELKIVGFSKDIGSSISLLPSIMHRLGNLLVAIELKHHLHSSFPEAAEISALRVLEALTTEKCQERLSLERLEVLGDAFLKFAVGRHFFLLHDSFHEGDLTSKRSNVVNNSNLFKLAIRRNLQVYIFDQAFDPFQFYALGRPCPRVCTEETEDSIHLCLNSGEEKRSVSGIRCNKNHHWLHRKTIADAVEALVGAFIVDSGFKAAFAFLTWIGIQVNFEASQVVNICTGSVDYFPLSAEVDIPSLESKLGHHFVHKGLLLQAFVHPSYNKHGGGCYQRLEFLGDAVLDYLITSYLYSAYPKLKPGQLTDLRALSVNNKAFACVAVDRCFDEFLLCDSNALTQAIKKYADCIRRPIPDCGNNGGPKSPKALGDLVESCIGAVLLDSGFDLNKVWKIMTSFLDPIMKFSSSLQLSPVRDLQELCQFNNLELQLLPSKFAKTFSVEAKVIGDGVSEKVYATSQNKKEASRIASQLLFSKLKAQGFKLKSKTLEDVMKSTFKTEPELIGYDETPIDVTDTTTIGQVMVNGDLCNKVNPEIRPIQEVSDASSSNVKPVVQRLQSSLKGKPSETIRNRVCVSDSSKTAKARLYELCASYCWKAPSFECCKEEGPDHLKLFTCKATMKIEEAPDTVFEFIGEPLPKKKDAADSAAEGALWYLQKEGYLHNANGN 1631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01378 1631 SMART DRBM_3 1546 1620 IPR014720 -
Vivi1g01378 1631 SMART DRBM_3 1378 1442 IPR014720 -
Vivi1g01378 1631 SMART riboneu5 1018 1185 IPR000999 GO:0004525|GO:0006396
Vivi1g01378 1631 SMART riboneu5 1221 1373 IPR000999 GO:0004525|GO:0006396
Vivi1g01378 1631 FunFam Endoribonuclease dicer-like 1 385 548 - -
Vivi1g01378 1631 Pfam Helicase conserved C-terminal domain 399 512 IPR001650 -
Vivi1g01378 1631 CDD RIBOc 1019 1175 IPR000999 GO:0004525|GO:0006396
Vivi1g01378 1631 PANTHER DICER-RELATED 63 1448 - -
Vivi1g01378 1631 SUPERFAMILY dsRNA-binding domain-like 1543 1625 - -
Vivi1g01378 1631 Pfam Ribonuclease III domain 1034 1165 IPR000999 GO:0004525|GO:0006396
Vivi1g01378 1631 Pfam Ribonuclease III domain 1241 1350 IPR000999 GO:0004525|GO:0006396
Vivi1g01378 1631 ProSitePatterns Ribonuclease III family signature. 1241 1249 IPR000999 GO:0004525|GO:0006396
Vivi1g01378 1631 SMART helicmild6 424 514 IPR001650 -
Vivi1g01378 1631 FunFam Endoribonuclease dicer-like 1 1200 1371 - -
Vivi1g01378 1631 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1545 1620 - -
Vivi1g01378 1631 FunFam Endoribonuclease dicer-like protein 44 283 - -
Vivi1g01378 1631 SUPERFAMILY dsRNA-binding domain-like 1332 1442 - -
Vivi1g01378 1631 SMART ultradead3 45 247 IPR014001 -
Vivi1g01378 1631 FunFam Dicer-like 103 864 967 - -
Vivi1g01378 1631 SMART PAZ_2_a_3 846 995 IPR003100 GO:0005515
Vivi1g01378 1631 FunFam Endoribonuclease dicer-like 1 573 669 - -
Vivi1g01378 1631 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 98 529 IPR027417 -
Vivi1g01378 1631 Gene3D - 49 301 IPR027417 -
Vivi1g01378 1631 CDD DSRM_DCL_plant 1552 1621 - -
Vivi1g01378 1631 Gene3D paz domain 865 967 - -
Vivi1g01378 1631 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 56 232 IPR014001 -
Vivi1g01378 1631 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 578 668 IPR005034 GO:0016891
Vivi1g01378 1631 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1545 1621 IPR014720 -
Vivi1g01378 1631 ProSiteProfiles PAZ domain profile. 870 969 IPR003100 GO:0005515
Vivi1g01378 1631 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 394 549 IPR001650 -
Vivi1g01378 1631 Pfam Dicer dimerisation domain 578 663 - -
Vivi1g01378 1631 ProSiteProfiles Ribonuclease III family domain profile. 1020 1165 IPR000999 GO:0004525|GO:0006396
Vivi1g01378 1631 SUPERFAMILY RNase III domain-like 1018 1179 IPR036389 GO:0004525|GO:0006396
Vivi1g01378 1631 SUPERFAMILY RNase III domain-like 1205 1369 IPR036389 GO:0004525|GO:0006396
Vivi1g01378 1631 Gene3D Ribonuclease III domain 1013 1176 IPR036389 GO:0004525|GO:0006396
Vivi1g01378 1631 Pfam PAZ domain 870 990 IPR003100 GO:0005515
Vivi1g01378 1631 Gene3D - 387 548 IPR027417 -
Vivi1g01378 1631 Gene3D - 1552 1622 - -
Vivi1g01378 1631 Pfam DEAD/DEAH box helicase 51 212 IPR011545 GO:0003676|GO:0005524
Vivi1g01378 1631 CDD DEXHc_dicer 47 246 - -
Vivi1g01378 1631 Gene3D Dicer dimerisation domain 573 669 IPR038248 -
Vivi1g01378 1631 Gene3D Ribonuclease III domain 1203 1377 IPR036389 GO:0004525|GO:0006396
Vivi1g01378 1631 ProSiteProfiles Ribonuclease III family domain profile. 1206 1350 IPR000999 GO:0004525|GO:0006396
Vivi1g01378 1631 CDD RIBOc 1222 1372 IPR000999 GO:0004525|GO:0006396
Vivi1g01378 1631 SUPERFAMILY PAZ domain 869 967 IPR036085 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01378 Vivi-Chr1 28865640 28882167 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01378 412 544 Eukaryotic Initiation Factors Gene Family AT3G19760 31.884 2.87e-08 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01378 K11592 - gmx:100818702 2547.31